Hb_000189_390

Information

Type -
Description -
Location Contig189: 343024-352489
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03430g
description hypothetical protein
nr
ID XP_012089229.1
description PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
swissprot
ID O23969
description Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1
trembl
ID A0A067JUI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23473 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18684: 343058-352532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_390 0.0 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
2 Hb_076233_030 0.1231737713 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
3 Hb_014497_030 0.1280873864 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
4 Hb_000803_090 0.1284513472 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
5 Hb_011609_010 0.1287939908 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
6 Hb_003529_180 0.1418569779 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
7 Hb_124951_010 0.1475667734 - - chitinase-like protein [Hevea brasiliensis]
8 Hb_000317_190 0.1489828839 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
9 Hb_002600_130 0.1492617055 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
10 Hb_002960_110 0.156469273 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
11 Hb_005568_090 0.1578415913 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_001624_040 0.1601765583 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
13 Hb_002301_210 0.1683903383 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
14 Hb_000008_390 0.1693857455 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
15 Hb_013016_010 0.1694305456 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004957_020 0.175035448 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003747_050 0.1787469002 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
18 Hb_000058_050 0.1789019465 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
19 Hb_074792_010 0.1858945395 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
20 Hb_000424_070 0.1879894242 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000189_390 Hb_000189_390 Hb_076233_030 Hb_076233_030 Hb_000189_390--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_000189_390--Hb_014497_030 Hb_000803_090 Hb_000803_090 Hb_000189_390--Hb_000803_090 Hb_011609_010 Hb_011609_010 Hb_000189_390--Hb_011609_010 Hb_003529_180 Hb_003529_180 Hb_000189_390--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_000189_390--Hb_124951_010 Hb_076233_030--Hb_014497_030 Hb_076233_030--Hb_000803_090 Hb_002030_120 Hb_002030_120 Hb_076233_030--Hb_002030_120 Hb_002960_110 Hb_002960_110 Hb_076233_030--Hb_002960_110 Hb_076233_030--Hb_003529_180 Hb_014497_030--Hb_000803_090 Hb_014497_030--Hb_011609_010 Hb_001776_200 Hb_001776_200 Hb_014497_030--Hb_001776_200 Hb_002301_210 Hb_002301_210 Hb_014497_030--Hb_002301_210 Hb_000803_090--Hb_011609_010 Hb_003747_050 Hb_003747_050 Hb_000803_090--Hb_003747_050 Hb_000008_390 Hb_000008_390 Hb_000803_090--Hb_000008_390 Hb_001624_040 Hb_001624_040 Hb_000803_090--Hb_001624_040 Hb_000803_090--Hb_002301_210 Hb_000631_090 Hb_000631_090 Hb_000803_090--Hb_000631_090 Hb_011609_010--Hb_001624_040 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_011609_010--Hb_003529_180 Hb_002600_130 Hb_002600_130 Hb_003529_180--Hb_002600_130 Hb_000732_030 Hb_000732_030 Hb_003529_180--Hb_000732_030 Hb_004725_030 Hb_004725_030 Hb_003529_180--Hb_004725_030 Hb_000009_220 Hb_000009_220 Hb_003529_180--Hb_000009_220 Hb_124951_010--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_124951_010--Hb_000317_190 Hb_000076_100 Hb_000076_100 Hb_124951_010--Hb_000076_100 Hb_163968_010 Hb_163968_010 Hb_124951_010--Hb_163968_010 Hb_001214_190 Hb_001214_190 Hb_124951_010--Hb_001214_190 Hb_000134_030 Hb_000134_030 Hb_124951_010--Hb_000134_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.0704 9.90029 30.8272 4.99725 6.21424 5.88462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.537626 0.290778 1.8825 4.46735 4.30169

CAGE analysis