Hb_000189_420

Information

Type -
Description -
Location Contig189: 361580-363826
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03450g
description POPTRDRAFT_571006; hypothetical protein
nr
ID XP_012089225.1
description PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23471 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18689: 361538-362478 , PASA_asmbl_18690: 362494-363739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_420 0.0 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
2 Hb_000211_070 0.1666894678 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
3 Hb_000101_210 0.167614528 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
4 Hb_004206_040 0.1738814309 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000890_220 0.1785210102 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
6 Hb_001247_140 0.1800801947 - - -
7 Hb_001811_060 0.1806261418 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
8 Hb_000792_110 0.1818877121 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
9 Hb_000211_080 0.1822739606 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_001907_060 0.1875543928 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
11 Hb_002918_070 0.1902095931 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
12 Hb_000779_040 0.1921878158 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
13 Hb_000213_060 0.1966398642 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
14 Hb_172256_010 0.2008211635 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000211_090 0.2010003306 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
16 Hb_000617_040 0.2012346361 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
17 Hb_000787_100 0.2035842553 - - PREDICTED: thiamine thiazole synthase, chloroplastic [Jatropha curcas]
18 Hb_006816_410 0.2053716824 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
19 Hb_013753_010 0.2075336095 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
20 Hb_004631_160 0.2082880318 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000189_420 Hb_000189_420 Hb_000211_070 Hb_000211_070 Hb_000189_420--Hb_000211_070 Hb_000101_210 Hb_000101_210 Hb_000189_420--Hb_000101_210 Hb_004206_040 Hb_004206_040 Hb_000189_420--Hb_004206_040 Hb_000890_220 Hb_000890_220 Hb_000189_420--Hb_000890_220 Hb_001247_140 Hb_001247_140 Hb_000189_420--Hb_001247_140 Hb_001811_060 Hb_001811_060 Hb_000189_420--Hb_001811_060 Hb_000211_070--Hb_000890_220 Hb_006901_040 Hb_006901_040 Hb_000211_070--Hb_006901_040 Hb_000213_060 Hb_000213_060 Hb_000211_070--Hb_000213_060 Hb_000779_040 Hb_000779_040 Hb_000211_070--Hb_000779_040 Hb_000787_100 Hb_000787_100 Hb_000211_070--Hb_000787_100 Hb_000211_070--Hb_004206_040 Hb_000101_210--Hb_004206_040 Hb_000544_120 Hb_000544_120 Hb_000101_210--Hb_000544_120 Hb_035360_010 Hb_035360_010 Hb_000101_210--Hb_035360_010 Hb_000101_210--Hb_000779_040 Hb_000211_080 Hb_000211_080 Hb_000101_210--Hb_000211_080 Hb_000101_210--Hb_000890_220 Hb_004206_040--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_004206_040--Hb_000792_110 Hb_004206_040--Hb_000890_220 Hb_000016_180 Hb_000016_180 Hb_004206_040--Hb_000016_180 Hb_004206_040--Hb_035360_010 Hb_025048_040 Hb_025048_040 Hb_004206_040--Hb_025048_040 Hb_000890_220--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_000890_220--Hb_000211_090 Hb_013753_010 Hb_013753_010 Hb_000890_220--Hb_013753_010 Hb_000890_220--Hb_000792_110 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_012760_200 Hb_012760_200 Hb_000890_220--Hb_012760_200 Hb_003299_080 Hb_003299_080 Hb_001247_140--Hb_003299_080 Hb_000365_060 Hb_000365_060 Hb_001247_140--Hb_000365_060 Hb_001247_140--Hb_013753_010 Hb_000375_370 Hb_000375_370 Hb_001247_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_001247_140--Hb_031089_030 Hb_005122_060 Hb_005122_060 Hb_001247_140--Hb_005122_060 Hb_000256_270 Hb_000256_270 Hb_001811_060--Hb_000256_270 Hb_001811_060--Hb_006901_040 Hb_000185_090 Hb_000185_090 Hb_001811_060--Hb_000185_090 Hb_002918_070 Hb_002918_070 Hb_001811_060--Hb_002918_070 Hb_001811_060--Hb_000213_060 Hb_000608_340 Hb_000608_340 Hb_001811_060--Hb_000608_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5265 8.98532 1.13209 1.15176 24.0651 36.7044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41332 0.461391 0.230974 10.148 1.3688

CAGE analysis