Hb_000189_440

Information

Type -
Description -
Location Contig189: 366384-368393
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47130g
description POPTRDRAFT_642655; hypothetical protein
nr
ID KDP23637.1
description hypothetical protein JCGZ_23470 [Jatropha curcas]
swissprot
ID Q944B0
description Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-1 PE=2 SV=1
trembl
ID A0A067JIC7
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_23470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18694: 366330-368422 , PASA_asmbl_18695: 366371-368396
cDNA
(Sanger)
(ID:Location)		 037_M18.ab1: 366341-368422

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_440 0.0 - - hypothetical protein JCGZ_23470 [Jatropha curcas]
2 Hb_000445_120 0.139958075 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000984_210 0.1608308881 - - PREDICTED: uncharacterized protein LOC104451821 [Eucalyptus grandis]
4 Hb_005228_040 0.1617262997 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
5 Hb_011310_040 0.1633843075 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
6 Hb_002596_080 0.1777153773 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
7 Hb_000805_010 0.1811393391 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
8 Hb_000649_040 0.1827635798 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
9 Hb_000556_010 0.1845815712 - - glycerate dehydrogenase, putative [Ricinus communis]
10 Hb_002182_020 0.1853629694 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_003226_250 0.1855084369 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
12 Hb_000684_400 0.1901364734 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
13 Hb_001493_060 0.1903164154 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
14 Hb_002157_270 0.1907093846 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
15 Hb_003935_070 0.1923765986 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_000107_350 0.1931788748 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
17 Hb_002164_020 0.1956382545 - - conserved hypothetical protein [Ricinus communis]
18 Hb_121089_050 0.1968875721 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002305_010 0.1971449276 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
20 Hb_007576_060 0.1978558094 - - -

Gene co-expression network

sample Hb_000189_440 Hb_000189_440 Hb_000445_120 Hb_000445_120 Hb_000189_440--Hb_000445_120 Hb_000984_210 Hb_000984_210 Hb_000189_440--Hb_000984_210 Hb_005228_040 Hb_005228_040 Hb_000189_440--Hb_005228_040 Hb_011310_040 Hb_011310_040 Hb_000189_440--Hb_011310_040 Hb_002596_080 Hb_002596_080 Hb_000189_440--Hb_002596_080 Hb_000805_010 Hb_000805_010 Hb_000189_440--Hb_000805_010 Hb_000264_040 Hb_000264_040 Hb_000445_120--Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_000445_120--Hb_002886_010 Hb_000445_120--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_000445_120--Hb_000649_040 Hb_002759_050 Hb_002759_050 Hb_000445_120--Hb_002759_050 Hb_000984_210--Hb_005228_040 Hb_002305_010 Hb_002305_010 Hb_000984_210--Hb_002305_010 Hb_003226_250 Hb_003226_250 Hb_000984_210--Hb_003226_250 Hb_003728_090 Hb_003728_090 Hb_000984_210--Hb_003728_090 Hb_183963_010 Hb_183963_010 Hb_000984_210--Hb_183963_010 Hb_000984_210--Hb_011310_040 Hb_009252_010 Hb_009252_010 Hb_005228_040--Hb_009252_010 Hb_001628_120 Hb_001628_120 Hb_005228_040--Hb_001628_120 Hb_005228_040--Hb_183963_010 Hb_005228_040--Hb_003226_250 Hb_000834_080 Hb_000834_080 Hb_005228_040--Hb_000834_080 Hb_011310_040--Hb_002596_080 Hb_000139_300 Hb_000139_300 Hb_011310_040--Hb_000139_300 Hb_002157_270 Hb_002157_270 Hb_011310_040--Hb_002157_270 Hb_011310_040--Hb_003226_250 Hb_002164_020 Hb_002164_020 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110 Hb_001493_060 Hb_001493_060 Hb_002596_080--Hb_001493_060 Hb_002596_080--Hb_002157_270 Hb_002596_080--Hb_003226_250 Hb_001195_090 Hb_001195_090 Hb_002596_080--Hb_001195_090 Hb_000445_150 Hb_000445_150 Hb_002596_080--Hb_000445_150 Hb_003935_070 Hb_003935_070 Hb_000805_010--Hb_003935_070 Hb_015141_010 Hb_015141_010 Hb_000805_010--Hb_015141_010 Hb_002759_220 Hb_002759_220 Hb_000805_010--Hb_002759_220 Hb_002817_040 Hb_002817_040 Hb_000805_010--Hb_002817_040 Hb_002235_110 Hb_002235_110 Hb_000805_010--Hb_002235_110 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.479866 0.135056 4.3029 12.6444 0.314116 2.36149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.984053 2.04848 1.49694 1.15651 14.5943

CAGE analysis