Hb_000189_480

Information

Type -
Description -
Location Contig189: 383267-386129
Sequence    

Annotation

kegg
ID cic:CICLE_v10002392mg
description hypothetical protein
nr
ID XP_011005690.1
description PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067JVT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23467 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18701: 383287-387129
cDNA
(Sanger)
(ID:Location)		 012_N22.ab1: 383293-386875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_480 0.0 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
2 Hb_001504_030 0.0859229179 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
3 Hb_113818_010 0.0871936732 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
4 Hb_000320_340 0.093579814 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
5 Hb_000140_340 0.0944340264 - - PREDICTED: protein ABIL1 [Jatropha curcas]
6 Hb_001157_230 0.0977458751 - - Protein AFR, putative [Ricinus communis]
7 Hb_007477_050 0.0985502683 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
8 Hb_048093_010 0.100410882 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
9 Hb_000399_060 0.106192937 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
10 Hb_008406_180 0.1066639282 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
11 Hb_001876_040 0.1067950894 - - PREDICTED: mucin-5B [Jatropha curcas]
12 Hb_000212_120 0.1070757578 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
13 Hb_174865_040 0.1091742117 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
14 Hb_000172_440 0.1095594303 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
15 Hb_024184_010 0.111613817 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
16 Hb_000390_190 0.1116357938 - - ATP binding protein, putative [Ricinus communis]
17 Hb_001882_020 0.1134371826 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
18 Hb_000327_110 0.1164835976 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
19 Hb_002289_060 0.117193483 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000200_350 0.1179697257 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_480 Hb_000189_480 Hb_001504_030 Hb_001504_030 Hb_000189_480--Hb_001504_030 Hb_113818_010 Hb_113818_010 Hb_000189_480--Hb_113818_010 Hb_000320_340 Hb_000320_340 Hb_000189_480--Hb_000320_340 Hb_000140_340 Hb_000140_340 Hb_000189_480--Hb_000140_340 Hb_001157_230 Hb_001157_230 Hb_000189_480--Hb_001157_230 Hb_007477_050 Hb_007477_050 Hb_000189_480--Hb_007477_050 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_133702_010 Hb_133702_010 Hb_001504_030--Hb_133702_010 Hb_001314_080 Hb_001314_080 Hb_001504_030--Hb_001314_080 Hb_000721_030 Hb_000721_030 Hb_001504_030--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_001504_030--Hb_001102_020 Hb_015934_120 Hb_015934_120 Hb_113818_010--Hb_015934_120 Hb_113818_010--Hb_001504_030 Hb_002289_060 Hb_002289_060 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_009661_030 Hb_009661_030 Hb_113818_010--Hb_009661_030 Hb_000399_060 Hb_000399_060 Hb_000320_340--Hb_000399_060 Hb_008406_180 Hb_008406_180 Hb_000320_340--Hb_008406_180 Hb_000320_340--Hb_001157_230 Hb_000860_060 Hb_000860_060 Hb_000320_340--Hb_000860_060 Hb_014361_060 Hb_014361_060 Hb_000320_340--Hb_014361_060 Hb_001876_040 Hb_001876_040 Hb_000140_340--Hb_001876_040 Hb_000359_290 Hb_000359_290 Hb_000140_340--Hb_000359_290 Hb_000796_150 Hb_000796_150 Hb_000140_340--Hb_000796_150 Hb_022693_130 Hb_022693_130 Hb_000140_340--Hb_022693_130 Hb_000212_120 Hb_000212_120 Hb_000140_340--Hb_000212_120 Hb_001157_230--Hb_001876_040 Hb_001157_230--Hb_000212_120 Hb_022250_010 Hb_022250_010 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_000172_440 Hb_000172_440 Hb_007477_050--Hb_000172_440 Hb_001104_130 Hb_001104_130 Hb_007477_050--Hb_001104_130 Hb_003994_300 Hb_003994_300 Hb_007477_050--Hb_003994_300 Hb_002400_320 Hb_002400_320 Hb_007477_050--Hb_002400_320 Hb_007477_050--Hb_009661_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35889 2.78815 5.64063 11.4214 2.47864 4.12785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.86487 3.21759 2.82701 2.46656 11.4529

CAGE analysis