Hb_000189_530

Information

Type -
Description -
Location Contig189: 417565-420278
Sequence    

Annotation

kegg
ID pmum:103318569
description 40S ribosomal protein S24-1
nr
ID ADR71267.1
description 40S ribosomal protein S24B [Hevea brasiliensis]
swissprot
ID Q8LC83
description 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2
trembl
ID I3NMN0
description 40S ribosomal protein S24 OS=Hevea brasiliensis GN=RPS24B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s24-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18706: 417554-420338
cDNA
(Sanger)
(ID:Location)		 001_J10.ab1: 417582-420277 , 005_K21.ab1: 417580-420270 , 012_A18.ab1: 417580-420239 , 021_D21.ab1: 417580-420251 , 029_O22.ab1: 417584-418994 , 030_E04.ab1: 417580-420193 , 032_F14.ab1: 417580-420232 , 036_D16.ab1: 417579-418948 , 041_H15.ab1: 417582-420075 , 043_O01.ab1: 417580-420256 , 049_I16.ab1: 417584-420194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_530 0.0 - - 40S ribosomal protein S24B [Hevea brasiliensis]
2 Hb_001019_090 0.0730059723 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
3 Hb_000617_320 0.0833369041 - - 40S ribosomal protein S21B [Hevea brasiliensis]
4 Hb_000366_100 0.0849459678 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
5 Hb_000152_430 0.0852529109 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
6 Hb_007166_050 0.0867927666 - - -
7 Hb_000193_350 0.0886552014 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
8 Hb_011016_090 0.088741874 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
9 Hb_008016_010 0.0890290641 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
10 Hb_000032_540 0.0906835497 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
11 Hb_011161_040 0.0909359862 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
12 Hb_024650_050 0.0949299836 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
13 Hb_119583_010 0.0956145993 - - 60S ribosomal protein L12A [Hevea brasiliensis]
14 Hb_025193_050 0.0979634749 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
15 Hb_004102_190 0.0984774547 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
16 Hb_004297_100 0.0988233119 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
17 Hb_000622_100 0.1020784457 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
18 Hb_004453_150 0.1022428224 - - BnaC02g13240D [Brassica napus]
19 Hb_000175_400 0.1039931949 - - conserved hypothetical protein [Ricinus communis]
20 Hb_034585_030 0.1056597577 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_530 Hb_000189_530 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_000189_530--Hb_000617_320 Hb_000366_100 Hb_000366_100 Hb_000189_530--Hb_000366_100 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_007166_050 Hb_007166_050 Hb_000189_530--Hb_007166_050 Hb_000193_350 Hb_000193_350 Hb_000189_530--Hb_000193_350 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_001019_090--Hb_007166_050 Hb_001019_090--Hb_000617_320 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_000617_320--Hb_007166_050 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_000617_320--Hb_004297_100 Hb_036369_010 Hb_036369_010 Hb_000366_100--Hb_036369_010 Hb_023675_010 Hb_023675_010 Hb_000366_100--Hb_023675_010 Hb_000752_060 Hb_000752_060 Hb_000366_100--Hb_000752_060 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010 Hb_011139_020 Hb_011139_020 Hb_000152_430--Hb_011139_020 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_025193_050 Hb_025193_050 Hb_000152_430--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_000152_430--Hb_024650_050 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_007166_050--Hb_003086_110 Hb_007166_050--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_000175_400 Hb_000175_400 Hb_000193_350--Hb_000175_400 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2308.17 339.631 302.416 732.619 2260.64 4354.64
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2634.19 3822.64 1443.89 607.642 148.357

CAGE analysis