Hb_000189_540

Information

Type -
Description -
Location Contig189: 422591-425465
Sequence    

Annotation

kegg
ID rcu:RCOM_1428530
description Guanine deaminase, putative (EC:3.5.4.3)
nr
ID XP_012089213.1
description PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
swissprot
ID O34598
description Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1
trembl
ID A0A067JLB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23461 PE=4 SV=1
Gene Ontology
ID GO:0008270
description trna(adenine ) chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18708: 422627-425477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_540 0.0 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
2 Hb_001322_070 0.1427696909 - - protein with unknown function [Ricinus communis]
3 Hb_002686_180 0.1444553459 - - PREDICTED: early nodulin-93-like [Populus euphratica]
4 Hb_098315_020 0.1453324083 - - hypothetical protein M569_15712 [Genlisea aurea]
5 Hb_020805_060 0.1475871026 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
6 Hb_000155_090 0.1478414384 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
7 Hb_000152_210 0.1515440807 - - conserved hypothetical protein [Ricinus communis]
8 Hb_098533_020 0.1551629571 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
9 Hb_004089_020 0.1556752004 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
10 Hb_000011_300 0.1581327518 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
11 Hb_000465_510 0.160084004 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
12 Hb_001431_080 0.1638058573 - - 40S ribosomal protein S11, putative [Ricinus communis]
13 Hb_170426_010 0.1638645589 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
14 Hb_000768_130 0.1645594366 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
15 Hb_004679_060 0.1651885827 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000005_300 0.1680954927 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006028_020 0.1686586861 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
18 Hb_000352_200 0.1708192714 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
19 Hb_004787_040 0.1715381919 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000340_500 0.1720465245 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000189_540 Hb_000189_540 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_020805_060 Hb_020805_060 Hb_000189_540--Hb_020805_060 Hb_000155_090 Hb_000155_090 Hb_000189_540--Hb_000155_090 Hb_000152_210 Hb_000152_210 Hb_000189_540--Hb_000152_210 Hb_001322_070--Hb_098315_020 Hb_005460_060 Hb_005460_060 Hb_001322_070--Hb_005460_060 Hb_000009_290 Hb_000009_290 Hb_001322_070--Hb_000009_290 Hb_000465_510 Hb_000465_510 Hb_001322_070--Hb_000465_510 Hb_000215_330 Hb_000215_330 Hb_001322_070--Hb_000215_330 Hb_005306_070 Hb_005306_070 Hb_001322_070--Hb_005306_070 Hb_000134_320 Hb_000134_320 Hb_002686_180--Hb_000134_320 Hb_024074_010 Hb_024074_010 Hb_002686_180--Hb_024074_010 Hb_015299_030 Hb_015299_030 Hb_002686_180--Hb_015299_030 Hb_001431_080 Hb_001431_080 Hb_002686_180--Hb_001431_080 Hb_132840_140 Hb_132840_140 Hb_002686_180--Hb_132840_140 Hb_002686_180--Hb_098315_020 Hb_002060_010 Hb_002060_010 Hb_098315_020--Hb_002060_010 Hb_098315_020--Hb_015299_030 Hb_098315_020--Hb_005460_060 Hb_004984_030 Hb_004984_030 Hb_098315_020--Hb_004984_030 Hb_001188_030 Hb_001188_030 Hb_098315_020--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_098315_020--Hb_001718_030 Hb_000768_140 Hb_000768_140 Hb_020805_060--Hb_000768_140 Hb_001164_030 Hb_001164_030 Hb_020805_060--Hb_001164_030 Hb_000011_300 Hb_000011_300 Hb_020805_060--Hb_000011_300 Hb_170426_010 Hb_170426_010 Hb_020805_060--Hb_170426_010 Hb_004787_040 Hb_004787_040 Hb_020805_060--Hb_004787_040 Hb_007441_170 Hb_007441_170 Hb_000155_090--Hb_007441_170 Hb_000155_090--Hb_020805_060 Hb_000155_090--Hb_000152_210 Hb_000352_200 Hb_000352_200 Hb_000155_090--Hb_000352_200 Hb_000155_090--Hb_000011_300 Hb_001450_030 Hb_001450_030 Hb_000152_210--Hb_001450_030 Hb_000152_210--Hb_007441_170 Hb_015807_160 Hb_015807_160 Hb_000152_210--Hb_015807_160 Hb_000152_210--Hb_000352_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.01014 16.9344 59.5332 51.383 4.11713 5.78314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1746 121.87 27.8856 12.0657 15.0287

CAGE analysis