Hb_000189_590

Information

Type -
Description -
Location Contig189: 476721-488339
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05040g
description hypothetical protein
nr
ID XP_012089208.1
description PREDICTED: cysteine synthase [Jatropha curcas]
swissprot
ID Q43317
description Cysteine synthase OS=Citrullus lanatus PE=1 SV=1
trembl
ID A0A067JLB4
description Cysteine synthase OS=Jatropha curcas GN=JCGZ_23456 PE=3 SV=1
Gene Ontology
ID GO:0004124
description cysteine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18714: 476346-479945 , PASA_asmbl_18715: 478263-478433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_590 0.0 - - PREDICTED: cysteine synthase [Jatropha curcas]
2 Hb_011947_020 0.1490327476 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_002539_020 0.1947187774 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
4 Hb_002539_010 0.1994935864 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
5 Hb_030982_060 0.1998162784 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001439_110 0.2059722326 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
7 Hb_002835_350 0.2125553152 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
8 Hb_012633_030 0.2126461242 - - hypothetical protein RCOM_0452240 [Ricinus communis]
9 Hb_000138_020 0.2239630507 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
10 Hb_000186_290 0.2258052612 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
11 Hb_000094_370 0.2261597847 - - -
12 Hb_000824_050 0.2269341869 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
13 Hb_032225_030 0.2273790805 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
14 Hb_000811_080 0.2279579344 - - conserved hypothetical protein [Ricinus communis]
15 Hb_020805_190 0.2282674899 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
16 Hb_005181_180 0.2297234744 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003098_080 0.2308397372 - - -
18 Hb_002471_260 0.2328038341 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
19 Hb_000300_590 0.2337681926 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
20 Hb_000181_020 0.2341130955 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000189_590 Hb_000189_590 Hb_011947_020 Hb_011947_020 Hb_000189_590--Hb_011947_020 Hb_002539_020 Hb_002539_020 Hb_000189_590--Hb_002539_020 Hb_002539_010 Hb_002539_010 Hb_000189_590--Hb_002539_010 Hb_030982_060 Hb_030982_060 Hb_000189_590--Hb_030982_060 Hb_001439_110 Hb_001439_110 Hb_000189_590--Hb_001439_110 Hb_002835_350 Hb_002835_350 Hb_000189_590--Hb_002835_350 Hb_011947_020--Hb_030982_060 Hb_000824_050 Hb_000824_050 Hb_011947_020--Hb_000824_050 Hb_023827_020 Hb_023827_020 Hb_011947_020--Hb_023827_020 Hb_032225_030 Hb_032225_030 Hb_011947_020--Hb_032225_030 Hb_004330_080 Hb_004330_080 Hb_011947_020--Hb_004330_080 Hb_002539_020--Hb_002539_010 Hb_006846_120 Hb_006846_120 Hb_002539_020--Hb_006846_120 Hb_008226_070 Hb_008226_070 Hb_002539_020--Hb_008226_070 Hb_007423_020 Hb_007423_020 Hb_002539_020--Hb_007423_020 Hb_100147_010 Hb_100147_010 Hb_002539_020--Hb_100147_010 Hb_000094_370 Hb_000094_370 Hb_002539_020--Hb_000094_370 Hb_011633_040 Hb_011633_040 Hb_002539_010--Hb_011633_040 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_000625_030 Hb_000625_030 Hb_002539_010--Hb_000625_030 Hb_001500_070 Hb_001500_070 Hb_002539_010--Hb_001500_070 Hb_002539_010--Hb_008226_070 Hb_030982_060--Hb_032225_030 Hb_030982_060--Hb_001439_110 Hb_000922_010 Hb_000922_010 Hb_030982_060--Hb_000922_010 Hb_003592_030 Hb_003592_030 Hb_030982_060--Hb_003592_030 Hb_003226_120 Hb_003226_120 Hb_001439_110--Hb_003226_120 Hb_138710_010 Hb_138710_010 Hb_001439_110--Hb_138710_010 Hb_001439_110--Hb_003592_030 Hb_001390_030 Hb_001390_030 Hb_001439_110--Hb_001390_030 Hb_006141_030 Hb_006141_030 Hb_002835_350--Hb_006141_030 Hb_032631_050 Hb_032631_050 Hb_002835_350--Hb_032631_050 Hb_002835_350--Hb_002539_010 Hb_000116_590 Hb_000116_590 Hb_002835_350--Hb_000116_590 Hb_011200_020 Hb_011200_020 Hb_002835_350--Hb_011200_020 Hb_000098_310 Hb_000098_310 Hb_002835_350--Hb_000098_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29224 3.43647 1.03237 18.4984 1.21204 1.42444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.4356 3.94579 0.745285 33.8445 9.87462

CAGE analysis