Hb_000189_620

Information

Type -
Description -
Location Contig189: 534078-536833
Sequence    

Annotation

kegg
ID rcu:RCOM_1428870
description Pre-rRNA-processing protein TSR2, putative
nr
ID KDP23617.1
description hypothetical protein JCGZ_23450 [Jatropha curcas]
swissprot
ID Q3T090
description Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus GN=TSR2 PE=2 SV=1
trembl
ID A0A067JIA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18721: 534072-536949
cDNA
(Sanger)
(ID:Location)		 005_M12.ab1: 534072-536766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_620 0.0 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
2 Hb_007426_230 0.0739669605 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
3 Hb_000123_260 0.0789579673 - - PREDICTED: protein gar2 [Jatropha curcas]
4 Hb_002006_020 0.0799161887 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
5 Hb_001477_110 0.0809645264 - - prohibitin, putative [Ricinus communis]
6 Hb_000160_170 0.082580011 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
7 Hb_002311_350 0.0870306785 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
8 Hb_000174_090 0.0876087879 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
9 Hb_000617_020 0.0887315123 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
10 Hb_004440_090 0.089355028 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
11 Hb_001545_140 0.0896545878 transcription factor TF Family: NAC -
12 Hb_000115_330 0.0904883857 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
13 Hb_002097_110 0.0907609161 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_003976_010 0.0936640485 - - methionine aminopeptidase, putative [Ricinus communis]
15 Hb_000380_190 0.0945497322 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
16 Hb_000832_140 0.0950599408 - - actin depolymerizing factor 4 [Hevea brasiliensis]
17 Hb_003097_150 0.097192285 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
18 Hb_172632_090 0.0972677657 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
19 Hb_002107_130 0.0977353778 - - protein with unknown function [Ricinus communis]
20 Hb_004195_160 0.097770553 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_620 Hb_000189_620 Hb_007426_230 Hb_007426_230 Hb_000189_620--Hb_007426_230 Hb_000123_260 Hb_000123_260 Hb_000189_620--Hb_000123_260 Hb_002006_020 Hb_002006_020 Hb_000189_620--Hb_002006_020 Hb_001477_110 Hb_001477_110 Hb_000189_620--Hb_001477_110 Hb_000160_170 Hb_000160_170 Hb_000189_620--Hb_000160_170 Hb_002311_350 Hb_002311_350 Hb_000189_620--Hb_002311_350 Hb_004195_160 Hb_004195_160 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180 Hb_004600_040 Hb_004600_040 Hb_000123_260--Hb_004600_040 Hb_000123_260--Hb_007426_230 Hb_001545_120 Hb_001545_120 Hb_000123_260--Hb_001545_120 Hb_003097_150 Hb_003097_150 Hb_000123_260--Hb_003097_150 Hb_000123_260--Hb_004195_160 Hb_001489_060 Hb_001489_060 Hb_002006_020--Hb_001489_060 Hb_063716_050 Hb_063716_050 Hb_002006_020--Hb_063716_050 Hb_002477_070 Hb_002477_070 Hb_002006_020--Hb_002477_070 Hb_003050_080 Hb_003050_080 Hb_002006_020--Hb_003050_080 Hb_002226_070 Hb_002226_070 Hb_002006_020--Hb_002226_070 Hb_002006_020--Hb_004440_090 Hb_001824_070 Hb_001824_070 Hb_001477_110--Hb_001824_070 Hb_000380_190 Hb_000380_190 Hb_001477_110--Hb_000380_190 Hb_001477_110--Hb_002311_350 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_001477_110--Hb_000007_100 Hb_021443_070 Hb_021443_070 Hb_000160_170--Hb_021443_070 Hb_000160_170--Hb_007426_230 Hb_003878_190 Hb_003878_190 Hb_000160_170--Hb_003878_190 Hb_000160_170--Hb_002097_110 Hb_000015_080 Hb_000015_080 Hb_000160_170--Hb_000015_080 Hb_002311_350--Hb_000380_190 Hb_004645_050 Hb_004645_050 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_002311_350--Hb_001824_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.9882 11.6061 7.7485 14.6685 51.2002 37.8639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.212 61.4646 37.1858 24.994 11.7034

CAGE analysis