Hb_000189_640

Information

Type -
Description -
Location Contig189: 547314-552031
Sequence    

Annotation

kegg
ID rcu:RCOM_1428900
description ATP-dependent helicase NAM7, putative
nr
ID XP_012089198.1
description PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
swissprot
ID Q8GYD9
description Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
trembl
ID A0A067JUF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23448 PE=4 SV=1
Gene Ontology
ID GO:0003724
description probable rna helicase sde3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18727: 547344-548234 , PASA_asmbl_18728: 548255-548532 , PASA_asmbl_18729: 548578-548820 , PASA_asmbl_18731: 549128-550099 , PASA_asmbl_18732: 550294-551862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_640 0.0 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
2 Hb_002842_020 0.1016622229 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
3 Hb_003893_010 0.1038405568 - - hypothetical protein M569_16374 [Genlisea aurea]
4 Hb_002045_130 0.1189509034 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
5 Hb_000617_260 0.1234326601 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
6 Hb_000291_110 0.1275277979 - - eukaryotic translation initiation factor [Hevea brasiliensis]
7 Hb_000602_010 0.1280046066 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
8 Hb_004920_120 0.1280356093 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003687_240 0.1285984258 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
10 Hb_000061_460 0.130474904 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
11 Hb_007441_230 0.1317101813 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
12 Hb_000010_470 0.1319272396 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
13 Hb_000482_090 0.1325387641 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
14 Hb_002835_410 0.1326070595 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
15 Hb_000599_350 0.1357265823 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
16 Hb_000365_020 0.1357315777 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
17 Hb_001959_210 0.1362381232 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
18 Hb_005548_010 0.1379984619 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
19 Hb_003120_030 0.1380267422 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
20 Hb_000590_100 0.1380435217 - - -

Gene co-expression network

sample Hb_000189_640 Hb_000189_640 Hb_002842_020 Hb_002842_020 Hb_000189_640--Hb_002842_020 Hb_003893_010 Hb_003893_010 Hb_000189_640--Hb_003893_010 Hb_002045_130 Hb_002045_130 Hb_000189_640--Hb_002045_130 Hb_000617_260 Hb_000617_260 Hb_000189_640--Hb_000617_260 Hb_000291_110 Hb_000291_110 Hb_000189_640--Hb_000291_110 Hb_000602_010 Hb_000602_010 Hb_000189_640--Hb_000602_010 Hb_000482_090 Hb_000482_090 Hb_002842_020--Hb_000482_090 Hb_000023_090 Hb_000023_090 Hb_002842_020--Hb_000023_090 Hb_002842_020--Hb_000602_010 Hb_019654_030 Hb_019654_030 Hb_002842_020--Hb_019654_030 Hb_002005_020 Hb_002005_020 Hb_002842_020--Hb_002005_020 Hb_001959_210 Hb_001959_210 Hb_003893_010--Hb_001959_210 Hb_000200_050 Hb_000200_050 Hb_003893_010--Hb_000200_050 Hb_000483_200 Hb_000483_200 Hb_003893_010--Hb_000483_200 Hb_001500_040 Hb_001500_040 Hb_003893_010--Hb_001500_040 Hb_003893_010--Hb_000602_010 Hb_004116_200 Hb_004116_200 Hb_002045_130--Hb_004116_200 Hb_000365_020 Hb_000365_020 Hb_002045_130--Hb_000365_020 Hb_002045_130--Hb_003893_010 Hb_002045_130--Hb_001500_040 Hb_002489_010 Hb_002489_010 Hb_002045_130--Hb_002489_010 Hb_000041_050 Hb_000041_050 Hb_000617_260--Hb_000041_050 Hb_000029_020 Hb_000029_020 Hb_000617_260--Hb_000029_020 Hb_000656_110 Hb_000656_110 Hb_000617_260--Hb_000656_110 Hb_000700_110 Hb_000700_110 Hb_000617_260--Hb_000700_110 Hb_001833_110 Hb_001833_110 Hb_000617_260--Hb_001833_110 Hb_000898_050 Hb_000898_050 Hb_000617_260--Hb_000898_050 Hb_000062_240 Hb_000062_240 Hb_000291_110--Hb_000062_240 Hb_001789_090 Hb_001789_090 Hb_000291_110--Hb_001789_090 Hb_181235_010 Hb_181235_010 Hb_000291_110--Hb_181235_010 Hb_004837_040 Hb_004837_040 Hb_000291_110--Hb_004837_040 Hb_003750_080 Hb_003750_080 Hb_000291_110--Hb_003750_080 Hb_000061_420 Hb_000061_420 Hb_000291_110--Hb_000061_420 Hb_000602_010--Hb_000029_020 Hb_002449_020 Hb_002449_020 Hb_000602_010--Hb_002449_020 Hb_000602_010--Hb_000482_090 Hb_002687_110 Hb_002687_110 Hb_000602_010--Hb_002687_110 Hb_001691_210 Hb_001691_210 Hb_000602_010--Hb_001691_210 Hb_000115_060 Hb_000115_060 Hb_000602_010--Hb_000115_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30649 2.31696 1.17341 3.78004 6.38574 5.1866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06244 5.94668 9.27233 8.82506 1.39953

CAGE analysis