Hb_000190_090

Information

Type -
Description -
Location Contig190: 121768-136561
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23670g
description POPTRDRAFT_818683; hypothetical protein
nr
ID XP_012092158.1
description PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
swissprot
ID E1C7T6
description tRNA wybutosine-synthesizing protein 5 OS=Gallus gallus GN=TYW5 PE=3 SV=1
trembl
ID A0A067JC60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21868 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18899: 122239-123518 , PASA_asmbl_18901: 133129-136364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_090 0.0 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
2 Hb_012022_080 0.0561232652 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_042474_010 0.0593293942 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
4 Hb_004096_110 0.0782734878 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
5 Hb_011224_160 0.0796213259 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
6 Hb_021576_010 0.0802982846 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
7 Hb_016347_010 0.0809815017 - - protein transporter, putative [Ricinus communis]
8 Hb_012760_040 0.0864578711 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
9 Hb_000327_250 0.0892197972 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
10 Hb_001493_150 0.0900906836 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
11 Hb_003777_290 0.0932657211 - - polypyrimidine tract binding protein, putative [Ricinus communis]
12 Hb_006916_110 0.0934878536 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
13 Hb_004880_150 0.0939578706 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
14 Hb_001221_020 0.0942967477 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
15 Hb_000159_120 0.0978873683 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
16 Hb_002232_360 0.1006701119 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
17 Hb_001828_180 0.1007215137 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
18 Hb_000209_100 0.1042852066 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
19 Hb_001214_090 0.1055829945 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
20 Hb_008226_070 0.1057160168 - - PREDICTED: expansin-A8 [Jatropha curcas]

Gene co-expression network

sample Hb_000190_090 Hb_000190_090 Hb_012022_080 Hb_012022_080 Hb_000190_090--Hb_012022_080 Hb_042474_010 Hb_042474_010 Hb_000190_090--Hb_042474_010 Hb_004096_110 Hb_004096_110 Hb_000190_090--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_000190_090--Hb_011224_160 Hb_021576_010 Hb_021576_010 Hb_000190_090--Hb_021576_010 Hb_016347_010 Hb_016347_010 Hb_000190_090--Hb_016347_010 Hb_000159_120 Hb_000159_120 Hb_012022_080--Hb_000159_120 Hb_025336_020 Hb_025336_020 Hb_012022_080--Hb_025336_020 Hb_012022_080--Hb_021576_010 Hb_000327_250 Hb_000327_250 Hb_012022_080--Hb_000327_250 Hb_012022_080--Hb_011224_160 Hb_012760_040 Hb_012760_040 Hb_042474_010--Hb_012760_040 Hb_004880_150 Hb_004880_150 Hb_042474_010--Hb_004880_150 Hb_001221_020 Hb_001221_020 Hb_042474_010--Hb_001221_020 Hb_006916_110 Hb_006916_110 Hb_042474_010--Hb_006916_110 Hb_042474_010--Hb_016347_010 Hb_004096_110--Hb_021576_010 Hb_003777_290 Hb_003777_290 Hb_004096_110--Hb_003777_290 Hb_004096_110--Hb_000327_250 Hb_000979_220 Hb_000979_220 Hb_004096_110--Hb_000979_220 Hb_011883_020 Hb_011883_020 Hb_004096_110--Hb_011883_020 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_000347_450 Hb_000347_450 Hb_011224_160--Hb_000347_450 Hb_000088_270 Hb_000088_270 Hb_011224_160--Hb_000088_270 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_011224_160--Hb_021576_010 Hb_021576_010--Hb_000979_220 Hb_021576_010--Hb_003777_290 Hb_021576_010--Hb_000327_250 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180 Hb_000363_040 Hb_000363_040 Hb_016347_010--Hb_000363_040 Hb_016347_010--Hb_000327_250 Hb_004677_050 Hb_004677_050 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.720745 1.2646 1.43633 1.73563 0.831314 1.03805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.876183 1.52068 1.22614 3.93321 1.70757

CAGE analysis