Hb_000190_100

Information

Type transcription factor
Description TF Family: C2H2
Location Contig190: 141951-146058
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04880g
description POPTRDRAFT_551125; hypothetical protein
nr
ID XP_002302090.2
description hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
swissprot
ID O22759
description Protein indeterminate-domain 12 OS=Arabidopsis thaliana GN=IDD12 PE=2 SV=2
trembl
ID B9GSI6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04880g PE=4 SV=2
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18902: 142257-145791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_100 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
2 Hb_000152_020 0.1779641963 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
3 Hb_007380_010 0.2500063003 - - hypothetical protein EUGRSUZ_L00213, partial [Eucalyptus grandis]
4 Hb_017434_060 0.2611183278 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
5 Hb_005841_080 0.2613924678 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
6 Hb_000215_410 0.2681271533 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
7 Hb_000140_410 0.2693441096 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
8 Hb_034337_010 0.27562518 - - vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_001122_010 0.2766396924 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_000049_090 0.276767619 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
11 Hb_000567_080 0.2786369011 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
12 Hb_011716_110 0.2786688851 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
13 Hb_007590_070 0.2795931743 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
14 Hb_000733_210 0.2803849091 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
15 Hb_005539_170 0.280485003 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
16 Hb_001269_040 0.2828637295 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_008221_170 0.2839414886 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]
18 Hb_117895_010 0.2847838967 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
19 Hb_004410_150 0.2852874707 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
20 Hb_008066_070 0.2911212634 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000190_100 Hb_000190_100 Hb_000152_020 Hb_000152_020 Hb_000190_100--Hb_000152_020 Hb_007380_010 Hb_007380_010 Hb_000190_100--Hb_007380_010 Hb_017434_060 Hb_017434_060 Hb_000190_100--Hb_017434_060 Hb_005841_080 Hb_005841_080 Hb_000190_100--Hb_005841_080 Hb_000215_410 Hb_000215_410 Hb_000190_100--Hb_000215_410 Hb_000140_410 Hb_000140_410 Hb_000190_100--Hb_000140_410 Hb_000152_020--Hb_000140_410 Hb_000152_020--Hb_000215_410 Hb_004410_150 Hb_004410_150 Hb_000152_020--Hb_004410_150 Hb_001529_050 Hb_001529_050 Hb_000152_020--Hb_001529_050 Hb_000086_660 Hb_000086_660 Hb_000152_020--Hb_000086_660 Hb_181909_010 Hb_181909_010 Hb_007380_010--Hb_181909_010 Hb_132915_010 Hb_132915_010 Hb_007380_010--Hb_132915_010 Hb_062585_010 Hb_062585_010 Hb_007380_010--Hb_062585_010 Hb_007537_010 Hb_007537_010 Hb_007380_010--Hb_007537_010 Hb_000567_080 Hb_000567_080 Hb_007380_010--Hb_000567_080 Hb_007307_030 Hb_007307_030 Hb_017434_060--Hb_007307_030 Hb_011311_020 Hb_011311_020 Hb_017434_060--Hb_011311_020 Hb_005702_030 Hb_005702_030 Hb_017434_060--Hb_005702_030 Hb_002007_240 Hb_002007_240 Hb_017434_060--Hb_002007_240 Hb_000987_140 Hb_000987_140 Hb_017434_060--Hb_000987_140 Hb_011344_170 Hb_011344_170 Hb_017434_060--Hb_011344_170 Hb_005157_010 Hb_005157_010 Hb_005841_080--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_005841_080--Hb_000685_060 Hb_003299_010 Hb_003299_010 Hb_005841_080--Hb_003299_010 Hb_002273_080 Hb_002273_080 Hb_005841_080--Hb_002273_080 Hb_005841_080--Hb_000215_410 Hb_000106_070 Hb_000106_070 Hb_005841_080--Hb_000106_070 Hb_002273_050 Hb_002273_050 Hb_000215_410--Hb_002273_050 Hb_129204_060 Hb_129204_060 Hb_000215_410--Hb_129204_060 Hb_000215_410--Hb_002273_080 Hb_002235_240 Hb_002235_240 Hb_000215_410--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_000215_410--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_000215_410--Hb_001269_690 Hb_000140_410--Hb_001269_690 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_000140_410--Hb_001529_050 Hb_003623_070 Hb_003623_070 Hb_000140_410--Hb_003623_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.115 30.6742 0.757752 6.19498 2.30931 6.23452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.861768 0.280086 12.5474 26.6927 1.53346

CAGE analysis