Hb_000190_110

Information

Type -
Description -
Location Contig190: 157777-166927
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_110 0.0 - - -
2 Hb_000603_210 0.1564092992 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
3 Hb_000078_010 0.173281231 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
4 Hb_001723_080 0.1760124236 - - hypothetical protein L484_026139 [Morus notabilis]
5 Hb_178968_170 0.1760314461 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
6 Hb_000300_400 0.1811190749 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
7 Hb_000444_030 0.1879590438 - - PREDICTED: expansin-A20 [Jatropha curcas]
8 Hb_103752_010 0.1896687707 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
9 Hb_099069_010 0.1903666112 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
10 Hb_000454_110 0.1921244024 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
11 Hb_002450_070 0.19321197 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
12 Hb_000250_010 0.1941652377 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_001012_040 0.1947540332 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
14 Hb_145226_010 0.1957772042 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
15 Hb_012395_210 0.1966281549 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001276_060 0.1996545638 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
17 Hb_000684_160 0.2021027705 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
18 Hb_149683_010 0.2021954658 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
19 Hb_000545_170 0.2041159434 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
20 Hb_005908_040 0.2043347432 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]

Gene co-expression network

sample Hb_000190_110 Hb_000190_110 Hb_000603_210 Hb_000603_210 Hb_000190_110--Hb_000603_210 Hb_000078_010 Hb_000078_010 Hb_000190_110--Hb_000078_010 Hb_001723_080 Hb_001723_080 Hb_000190_110--Hb_001723_080 Hb_178968_170 Hb_178968_170 Hb_000190_110--Hb_178968_170 Hb_000300_400 Hb_000300_400 Hb_000190_110--Hb_000300_400 Hb_000444_030 Hb_000444_030 Hb_000190_110--Hb_000444_030 Hb_000603_210--Hb_000300_400 Hb_003777_230 Hb_003777_230 Hb_000603_210--Hb_003777_230 Hb_002235_230 Hb_002235_230 Hb_000603_210--Hb_002235_230 Hb_006816_440 Hb_006816_440 Hb_000603_210--Hb_006816_440 Hb_000603_210--Hb_000444_030 Hb_149683_010 Hb_149683_010 Hb_000603_210--Hb_149683_010 Hb_007810_030 Hb_007810_030 Hb_000078_010--Hb_007810_030 Hb_015934_020 Hb_015934_020 Hb_000078_010--Hb_015934_020 Hb_000367_280 Hb_000367_280 Hb_000078_010--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_000078_010--Hb_001213_120 Hb_111648_010 Hb_111648_010 Hb_000078_010--Hb_111648_010 Hb_004297_040 Hb_004297_040 Hb_000078_010--Hb_004297_040 Hb_000454_110 Hb_000454_110 Hb_001723_080--Hb_000454_110 Hb_001012_040 Hb_001012_040 Hb_001723_080--Hb_001012_040 Hb_001723_080--Hb_000300_400 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_012395_210 Hb_012395_210 Hb_001723_080--Hb_012395_210 Hb_080477_060 Hb_080477_060 Hb_178968_170--Hb_080477_060 Hb_004474_010 Hb_004474_010 Hb_178968_170--Hb_004474_010 Hb_178968_170--Hb_001723_080 Hb_143766_100 Hb_143766_100 Hb_178968_170--Hb_143766_100 Hb_178968_170--Hb_012395_210 Hb_103752_010 Hb_103752_010 Hb_178968_170--Hb_103752_010 Hb_005539_210 Hb_005539_210 Hb_000300_400--Hb_005539_210 Hb_000300_400--Hb_149683_010 Hb_000300_400--Hb_006816_440 Hb_000300_400--Hb_002235_230 Hb_001741_080 Hb_001741_080 Hb_000444_030--Hb_001741_080 Hb_000184_180 Hb_000184_180 Hb_000444_030--Hb_000184_180 Hb_001514_180 Hb_001514_180 Hb_000444_030--Hb_001514_180 Hb_000444_030--Hb_006816_440 Hb_000041_070 Hb_000041_070 Hb_000444_030--Hb_000041_070 Hb_043061_010 Hb_043061_010 Hb_000444_030--Hb_043061_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0284558 0 0 0 0.0142569 0.0716913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.226965 0.178556 0.14359 0 0

CAGE analysis