Hb_000190_120

Information

Type -
Description -
Location Contig190: 171375-191482
Sequence    

Annotation

kegg
ID rcu:RCOM_0990320
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012092164.1
description PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
swissprot
ID Q93YS2
description Probable protein phosphatase 2C 51 OS=Arabidopsis thaliana GN=At3g63340 PE=2 SV=2
trembl
ID B9S4N3
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0990320 PE=4 SV=1
Gene Ontology
ID GO:0004672
description phosphatase 2c family protein isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18906: 171798-173953 , PASA_asmbl_18907: 173978-174121 , PASA_asmbl_18908: 174772-176827 , PASA_asmbl_18910: 181622-187845 , PASA_asmbl_18911: 182773-187206 , PASA_asmbl_18913: 184687-185125 , PASA_asmbl_18915: 188336-188707 , PASA_asmbl_18916: 188013-190697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_120 0.0 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
2 Hb_007576_110 0.0516120336 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
3 Hb_002823_030 0.052800767 - - -
4 Hb_003371_110 0.0561576589 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
5 Hb_000347_070 0.0580421094 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009175_020 0.0598146688 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
7 Hb_003680_150 0.0638469222 - - srpk, putative [Ricinus communis]
8 Hb_000011_230 0.0638551961 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
9 Hb_003362_070 0.064207828 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_001195_320 0.0642886502 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
11 Hb_016898_010 0.0648650333 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
12 Hb_004128_050 0.0649181888 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
13 Hb_014361_070 0.0651541155 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
14 Hb_000035_290 0.0657288762 - - RNA recognition motif-containing family protein [Populus trichocarpa]
15 Hb_002835_230 0.0663332002 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_009545_100 0.0669475406 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
17 Hb_000193_190 0.0670885263 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
18 Hb_000166_130 0.0673387704 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000343_120 0.068118576 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
20 Hb_104061_020 0.0697497982 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000190_120 Hb_000190_120 Hb_007576_110 Hb_007576_110 Hb_000190_120--Hb_007576_110 Hb_002823_030 Hb_002823_030 Hb_000190_120--Hb_002823_030 Hb_003371_110 Hb_003371_110 Hb_000190_120--Hb_003371_110 Hb_000347_070 Hb_000347_070 Hb_000190_120--Hb_000347_070 Hb_009175_020 Hb_009175_020 Hb_000190_120--Hb_009175_020 Hb_003680_150 Hb_003680_150 Hb_000190_120--Hb_003680_150 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_014361_070 Hb_014361_070 Hb_007576_110--Hb_014361_070 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010 Hb_002823_030--Hb_003680_150 Hb_002823_030--Hb_003371_110 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_002823_030--Hb_014361_070 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130 Hb_003371_110--Hb_014361_070 Hb_001195_320 Hb_001195_320 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_009486_180 Hb_009486_180 Hb_009175_020--Hb_009486_180 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070 Hb_003680_150--Hb_007576_110 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18531 3.56957 2.03159 2.29633 4.74282 4.28004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07004 2.54747 2.38729 3.22743 2.75814

CAGE analysis