Hb_000190_140

Information

Type transcription factor
Description TF Family: TRAF
Location Contig190: 194416-199760
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23610g
description POPTRDRAFT_715033; hypothetical protein
nr
ID XP_012092165.1
description PREDICTED: ETO1-like protein 1 [Jatropha curcas]
swissprot
ID Q9ZQX6
description ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1
trembl
ID A0A067JC65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21873 PE=4 SV=1
Gene Ontology
ID GO:0000394
description eto1-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18918: 194390-200159 , PASA_asmbl_18919: 198975-199142 , PASA_asmbl_18920: 195901-196283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_140 0.0 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
2 Hb_000754_060 0.0476381997 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
3 Hb_000120_950 0.0559243863 - - PREDICTED: protein GRIP [Jatropha curcas]
4 Hb_009111_050 0.060364355 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
5 Hb_001454_210 0.0633071478 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
6 Hb_005062_070 0.063716491 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
7 Hb_015306_020 0.0717846296 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
8 Hb_001030_120 0.0735267173 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_007951_050 0.0740388065 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000030_010 0.0759393188 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
11 Hb_000062_240 0.0762730438 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
12 Hb_002477_160 0.0765510596 - - hypothetical protein L484_013453 [Morus notabilis]
13 Hb_039837_010 0.0773842791 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
14 Hb_000120_800 0.0775198092 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
15 Hb_028872_140 0.0789728238 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
16 Hb_168707_030 0.079043733 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
17 Hb_001584_330 0.0791396719 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
18 Hb_002811_360 0.0805501559 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
19 Hb_005306_110 0.0807841463 - - casein kinase, putative [Ricinus communis]
20 Hb_001604_010 0.0821826373 - - 14-3-3 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000190_140 Hb_000190_140 Hb_000754_060 Hb_000754_060 Hb_000190_140--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_000190_140--Hb_000120_950 Hb_009111_050 Hb_009111_050 Hb_000190_140--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_000190_140--Hb_001454_210 Hb_005062_070 Hb_005062_070 Hb_000190_140--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_000190_140--Hb_015306_020 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000436_070 Hb_000436_070 Hb_000120_950--Hb_000436_070 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_000120_950--Hb_002477_160 Hb_028872_140 Hb_028872_140 Hb_009111_050--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_009111_050--Hb_033642_010 Hb_001030_120 Hb_001030_120 Hb_009111_050--Hb_001030_120 Hb_009111_050--Hb_001454_210 Hb_009111_050--Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_001454_210--Hb_028872_140 Hb_001454_210--Hb_005062_070 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001454_210--Hb_001030_120 Hb_005062_070--Hb_001030_120 Hb_004046_010 Hb_004046_010 Hb_005062_070--Hb_004046_010 Hb_005062_070--Hb_000030_010 Hb_005062_070--Hb_009111_050 Hb_002890_340 Hb_002890_340 Hb_015306_020--Hb_002890_340 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_015306_020--Hb_004046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.6445 24.6196 17.7849 17.6471 47.8192 68.0073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.2069 43.7598 73.9269 29.3872 13.663

CAGE analysis