Hb_000190_150

Information

Type transcription factor
Description TF Family: Tify
Location Contig190: 208146-213045
Sequence    

Annotation

kegg
ID tcc:TCM_004282
description TIFY domain/Divergent CCT motif family protein, putative isoform 1
nr
ID XP_012092168.1
description PREDICTED: protein TIFY 4B-like isoform X1 [Jatropha curcas]
swissprot
ID Q8GY55
description Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=1 SV=1
trembl
ID A0A067JF47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21874 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18922: 208268-209202 , PASA_asmbl_18923: 209211-210726 , PASA_asmbl_18924: 210207-210696 , PASA_asmbl_18925: 210817-212473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_150 0.0 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B-like isoform X1 [Jatropha curcas]
2 Hb_004912_030 0.0851681416 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
3 Hb_000130_420 0.0875910001 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
4 Hb_011972_020 0.0933023926 - - protein binding protein, putative [Ricinus communis]
5 Hb_000238_040 0.0941266181 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
6 Hb_001579_330 0.0955005484 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
7 Hb_001619_150 0.0963469265 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
8 Hb_002814_110 0.0964456218 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
9 Hb_017151_010 0.0970725286 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
10 Hb_002092_080 0.0990407156 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
11 Hb_000362_170 0.0992390986 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
12 Hb_000922_020 0.100637005 - - protein binding protein, putative [Ricinus communis]
13 Hb_008921_010 0.100678112 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
14 Hb_139002_010 0.102831735 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
15 Hb_005288_080 0.1033271653 - - conserved hypothetical protein [Ricinus communis]
16 Hb_055235_020 0.1038099694 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
17 Hb_005895_010 0.1061233355 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
18 Hb_000847_080 0.1068341587 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
19 Hb_032202_080 0.1077958988 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
20 Hb_002942_210 0.1083236467 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]

Gene co-expression network

sample Hb_000190_150 Hb_000190_150 Hb_004912_030 Hb_004912_030 Hb_000190_150--Hb_004912_030 Hb_000130_420 Hb_000130_420 Hb_000190_150--Hb_000130_420 Hb_011972_020 Hb_011972_020 Hb_000190_150--Hb_011972_020 Hb_000238_040 Hb_000238_040 Hb_000190_150--Hb_000238_040 Hb_001579_330 Hb_001579_330 Hb_000190_150--Hb_001579_330 Hb_001619_150 Hb_001619_150 Hb_000190_150--Hb_001619_150 Hb_004912_030--Hb_000130_420 Hb_001005_030 Hb_001005_030 Hb_004912_030--Hb_001005_030 Hb_002092_080 Hb_002092_080 Hb_004912_030--Hb_002092_080 Hb_000243_210 Hb_000243_210 Hb_004912_030--Hb_000243_210 Hb_000362_170 Hb_000362_170 Hb_004912_030--Hb_000362_170 Hb_053079_020 Hb_053079_020 Hb_004912_030--Hb_053079_020 Hb_000130_420--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_000130_420--Hb_000635_040 Hb_000130_420--Hb_011972_020 Hb_002014_040 Hb_002014_040 Hb_000130_420--Hb_002014_040 Hb_000130_420--Hb_000238_040 Hb_055235_020 Hb_055235_020 Hb_011972_020--Hb_055235_020 Hb_000457_230 Hb_000457_230 Hb_011972_020--Hb_000457_230 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_011972_020--Hb_002014_040 Hb_011972_020--Hb_000238_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_000238_040--Hb_001579_330 Hb_000116_030 Hb_000116_030 Hb_000238_040--Hb_000116_030 Hb_002811_270 Hb_002811_270 Hb_000238_040--Hb_002811_270 Hb_000238_040--Hb_000457_230 Hb_001579_330--Hb_002811_270 Hb_001579_330--Hb_011972_020 Hb_001579_330--Hb_000130_420 Hb_001257_030 Hb_001257_030 Hb_001579_330--Hb_001257_030 Hb_001579_330--Hb_000116_030 Hb_007765_080 Hb_007765_080 Hb_001619_150--Hb_007765_080 Hb_001619_150--Hb_002092_080 Hb_028308_010 Hb_028308_010 Hb_001619_150--Hb_028308_010 Hb_011618_080 Hb_011618_080 Hb_001619_150--Hb_011618_080 Hb_000855_020 Hb_000855_020 Hb_001619_150--Hb_000855_020 Hb_001619_150--Hb_004912_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39174 3.40229 4.83116 3.18911 4.64954 2.06347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53858 1.02786 1.80902 1.7272 3.66029

CAGE analysis