Hb_000190_160

Information

Type -
Description -
Location Contig190: 217070-221140
Sequence    

Annotation

kegg
ID cit:102624612
description ankyrin repeat-containing protein At3g12360-like
nr
ID XP_012092172.1
description PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
swissprot
ID Q01484
description Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4
trembl
ID A0A067JC30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21877 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18926: 217343-218160 , PASA_asmbl_18927: 219600-220981 , PASA_asmbl_18928: 221045-221192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_160 0.0 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
2 Hb_004732_070 0.0969182542 - - conserved hypothetical protein [Ricinus communis]
3 Hb_089040_010 0.1166392025 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
4 Hb_004112_080 0.1214354212 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
5 Hb_039075_010 0.1291040174 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
6 Hb_000310_040 0.1298669655 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
7 Hb_030360_010 0.1299272392 - - -
8 Hb_003777_150 0.1330803923 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
9 Hb_002970_030 0.1338636553 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000333_140 0.1355187774 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_000270_050 0.136077358 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
12 Hb_009062_020 0.1391712476 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
13 Hb_002307_150 0.1397024079 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
14 Hb_004453_060 0.1425588551 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
15 Hb_003427_070 0.1446178677 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
16 Hb_001136_080 0.1446781259 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
17 Hb_016911_010 0.1452434124 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
18 Hb_011628_010 0.1490632094 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_004705_060 0.1510518973 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
20 Hb_011120_030 0.1513048018 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]

Gene co-expression network

sample Hb_000190_160 Hb_000190_160 Hb_004732_070 Hb_004732_070 Hb_000190_160--Hb_004732_070 Hb_089040_010 Hb_089040_010 Hb_000190_160--Hb_089040_010 Hb_004112_080 Hb_004112_080 Hb_000190_160--Hb_004112_080 Hb_039075_010 Hb_039075_010 Hb_000190_160--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_000190_160--Hb_000310_040 Hb_030360_010 Hb_030360_010 Hb_000190_160--Hb_030360_010 Hb_004732_070--Hb_000310_040 Hb_004732_070--Hb_039075_010 Hb_003777_150 Hb_003777_150 Hb_004732_070--Hb_003777_150 Hb_000270_050 Hb_000270_050 Hb_004732_070--Hb_000270_050 Hb_004732_070--Hb_030360_010 Hb_003598_020 Hb_003598_020 Hb_089040_010--Hb_003598_020 Hb_002970_030 Hb_002970_030 Hb_089040_010--Hb_002970_030 Hb_016911_010 Hb_016911_010 Hb_089040_010--Hb_016911_010 Hb_001136_080 Hb_001136_080 Hb_089040_010--Hb_001136_080 Hb_089040_010--Hb_039075_010 Hb_089040_010--Hb_000310_040 Hb_004112_080--Hb_030360_010 Hb_009367_070 Hb_009367_070 Hb_004112_080--Hb_009367_070 Hb_004112_080--Hb_039075_010 Hb_004705_060 Hb_004705_060 Hb_004112_080--Hb_004705_060 Hb_011628_010 Hb_011628_010 Hb_004112_080--Hb_011628_010 Hb_034713_010 Hb_034713_010 Hb_004112_080--Hb_034713_010 Hb_039075_010--Hb_030360_010 Hb_039075_010--Hb_000310_040 Hb_039075_010--Hb_016911_010 Hb_000333_140 Hb_000333_140 Hb_039075_010--Hb_000333_140 Hb_039075_010--Hb_011628_010 Hb_000310_040--Hb_000333_140 Hb_005211_170 Hb_005211_170 Hb_000310_040--Hb_005211_170 Hb_000310_040--Hb_030360_010 Hb_000861_060 Hb_000861_060 Hb_000310_040--Hb_000861_060 Hb_000739_190 Hb_000739_190 Hb_030360_010--Hb_000739_190 Hb_030360_010--Hb_011628_010 Hb_030360_010--Hb_004705_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.954853 3.96553 10.4791 0.21759 0.14677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0198781 0.0156413 0 0.19271 0.43109

CAGE analysis