Hb_000190_170

Information

Type -
Description -
Location Contig190: 239654-240853
Sequence    

Annotation

kegg
ID vvi:100243499
description chlorophyllase-1
nr
ID XP_012092177.1
description PREDICTED: chlorophyllase-1-like [Jatropha curcas]
swissprot
ID Q9LE89
description Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1
trembl
ID A0A067JPE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21880 PE=4 SV=1
Gene Ontology
ID GO:0044763
description chlorophyllase-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18930: 240130-240867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_170 0.0 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
2 Hb_002411_090 0.0927738786 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
3 Hb_039222_010 0.095533121 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
4 Hb_001544_090 0.0986319644 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_007811_020 0.1037110242 - - PREDICTED: expansin-A6 [Jatropha curcas]
6 Hb_004117_090 0.1074466876 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
7 Hb_001095_020 0.108649899 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
8 Hb_000392_110 0.113496805 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_001080_190 0.1149083619 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
10 Hb_000005_240 0.1154246576 - - Shugoshin-1, putative [Ricinus communis]
11 Hb_004435_020 0.1178466868 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
12 Hb_000342_040 0.1181967083 - - pollen specific protein sf21, putative [Ricinus communis]
13 Hb_001159_230 0.1199579075 - - Kinesin heavy chain, putative [Ricinus communis]
14 Hb_002150_090 0.1207121594 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
15 Hb_004137_040 0.1219880592 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
16 Hb_003894_110 0.1231762797 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
17 Hb_000907_160 0.1238876691 - - calcineurin-like phosphoesterase [Manihot esculenta]
18 Hb_005976_110 0.1243431459 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
19 Hb_000483_450 0.1245565237 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
20 Hb_000878_050 0.1255631629 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000190_170 Hb_000190_170 Hb_002411_090 Hb_002411_090 Hb_000190_170--Hb_002411_090 Hb_039222_010 Hb_039222_010 Hb_000190_170--Hb_039222_010 Hb_001544_090 Hb_001544_090 Hb_000190_170--Hb_001544_090 Hb_007811_020 Hb_007811_020 Hb_000190_170--Hb_007811_020 Hb_004117_090 Hb_004117_090 Hb_000190_170--Hb_004117_090 Hb_001095_020 Hb_001095_020 Hb_000190_170--Hb_001095_020 Hb_000005_240 Hb_000005_240 Hb_002411_090--Hb_000005_240 Hb_009486_050 Hb_009486_050 Hb_002411_090--Hb_009486_050 Hb_002411_090--Hb_039222_010 Hb_001080_190 Hb_001080_190 Hb_002411_090--Hb_001080_190 Hb_001021_120 Hb_001021_120 Hb_002411_090--Hb_001021_120 Hb_003894_110 Hb_003894_110 Hb_039222_010--Hb_003894_110 Hb_039222_010--Hb_000005_240 Hb_007218_040 Hb_007218_040 Hb_039222_010--Hb_007218_040 Hb_000483_450 Hb_000483_450 Hb_039222_010--Hb_000483_450 Hb_039222_010--Hb_001021_120 Hb_005976_110 Hb_005976_110 Hb_001544_090--Hb_005976_110 Hb_001544_090--Hb_001080_190 Hb_001674_010 Hb_001674_010 Hb_001544_090--Hb_001674_010 Hb_001544_090--Hb_001095_020 Hb_000032_420 Hb_000032_420 Hb_001544_090--Hb_000032_420 Hb_007617_010 Hb_007617_010 Hb_001544_090--Hb_007617_010 Hb_004435_020 Hb_004435_020 Hb_007811_020--Hb_004435_020 Hb_007811_020--Hb_001544_090 Hb_007811_020--Hb_007218_040 Hb_000878_050 Hb_000878_050 Hb_007811_020--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_007811_020--Hb_000392_110 Hb_001541_130 Hb_001541_130 Hb_007811_020--Hb_001541_130 Hb_005496_040 Hb_005496_040 Hb_004117_090--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_004117_090--Hb_000342_040 Hb_004117_090--Hb_001544_090 Hb_004117_090--Hb_005976_110 Hb_004117_090--Hb_000032_420 Hb_001095_020--Hb_001674_010 Hb_002150_090 Hb_002150_090 Hb_001095_020--Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_001095_020--Hb_000028_190 Hb_001095_020--Hb_004435_020 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_001095_020--Hb_001541_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.388795 4.73654 6.39091 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231999 0.109487 0.0674765 0.307702 3.4512

CAGE analysis