Hb_000190_190

Information

Type -
Description -
Location Contig190: 284428-293302
Sequence    

Annotation

kegg
ID tcc:TCM_004291
description Bax inhibitor-1 family protein
nr
ID XP_012473540.1
description PREDICTED: BI1-like protein [Gossypium raimondii]
swissprot
ID Q94A20
description BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1
trembl
ID A0A0D9W044
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0016021
description bi1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18931: 284249-290703 , PASA_asmbl_18932: 289292-289731 , PASA_asmbl_18933: 292509-293520
cDNA
(Sanger)
(ID:Location)		 053_A04r.ab1: 284250-284853

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_190 0.0 - - PREDICTED: BI1-like protein [Gossypium raimondii]
2 Hb_033312_150 0.1235313141 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
3 Hb_001232_100 0.1572369251 - - Heat shock 70 kDa protein, putative [Ricinus communis]
4 Hb_001454_170 0.1629680555 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
5 Hb_006618_040 0.1658809568 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
6 Hb_004635_130 0.1668686371 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
7 Hb_097218_010 0.1670849358 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
8 Hb_000343_110 0.1671366666 - - Heat shock 70 kDa protein, putative [Ricinus communis]
9 Hb_001189_090 0.1724162971 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_000483_380 0.1728234321 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
11 Hb_158604_010 0.1753244254 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
12 Hb_004336_040 0.1757272981 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
13 Hb_000573_060 0.1784794199 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
14 Hb_013394_060 0.179069959 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
15 Hb_001963_100 0.1796438696 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
16 Hb_002641_130 0.1832948725 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
17 Hb_134362_010 0.1836938309 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
18 Hb_128743_010 0.1853587797 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_000005_070 0.1858423531 transcription factor TF Family: PHD protein binding protein, putative [Ricinus communis]
20 Hb_000787_090 0.18660138 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]

Gene co-expression network

sample Hb_000190_190 Hb_000190_190 Hb_033312_150 Hb_033312_150 Hb_000190_190--Hb_033312_150 Hb_001232_100 Hb_001232_100 Hb_000190_190--Hb_001232_100 Hb_001454_170 Hb_001454_170 Hb_000190_190--Hb_001454_170 Hb_006618_040 Hb_006618_040 Hb_000190_190--Hb_006618_040 Hb_004635_130 Hb_004635_130 Hb_000190_190--Hb_004635_130 Hb_097218_010 Hb_097218_010 Hb_000190_190--Hb_097218_010 Hb_033312_150--Hb_097218_010 Hb_000483_380 Hb_000483_380 Hb_033312_150--Hb_000483_380 Hb_003666_020 Hb_003666_020 Hb_033312_150--Hb_003666_020 Hb_000352_070 Hb_000352_070 Hb_033312_150--Hb_000352_070 Hb_158604_010 Hb_158604_010 Hb_033312_150--Hb_158604_010 Hb_000343_110 Hb_000343_110 Hb_033312_150--Hb_000343_110 Hb_000260_560 Hb_000260_560 Hb_001232_100--Hb_000260_560 Hb_000334_170 Hb_000334_170 Hb_001232_100--Hb_000334_170 Hb_001232_100--Hb_006618_040 Hb_000573_060 Hb_000573_060 Hb_001232_100--Hb_000573_060 Hb_006052_030 Hb_006052_030 Hb_001232_100--Hb_006052_030 Hb_000329_100 Hb_000329_100 Hb_001232_100--Hb_000329_100 Hb_000949_020 Hb_000949_020 Hb_001454_170--Hb_000949_020 Hb_001673_050 Hb_001673_050 Hb_001454_170--Hb_001673_050 Hb_000334_130 Hb_000334_130 Hb_001454_170--Hb_000334_130 Hb_134362_010 Hb_134362_010 Hb_001454_170--Hb_134362_010 Hb_009486_080 Hb_009486_080 Hb_001454_170--Hb_009486_080 Hb_001454_170--Hb_000573_060 Hb_006618_040--Hb_000334_170 Hb_006618_040--Hb_000343_110 Hb_000941_140 Hb_000941_140 Hb_006618_040--Hb_000941_140 Hb_002400_230 Hb_002400_230 Hb_006618_040--Hb_002400_230 Hb_004296_010 Hb_004296_010 Hb_006618_040--Hb_004296_010 Hb_000755_080 Hb_000755_080 Hb_004635_130--Hb_000755_080 Hb_001051_090 Hb_001051_090 Hb_004635_130--Hb_001051_090 Hb_003327_030 Hb_003327_030 Hb_004635_130--Hb_003327_030 Hb_000787_090 Hb_000787_090 Hb_004635_130--Hb_000787_090 Hb_002896_060 Hb_002896_060 Hb_004635_130--Hb_002896_060 Hb_002814_120 Hb_002814_120 Hb_004635_130--Hb_002814_120 Hb_001959_020 Hb_001959_020 Hb_097218_010--Hb_001959_020 Hb_001668_010 Hb_001668_010 Hb_097218_010--Hb_001668_010 Hb_007558_070 Hb_007558_070 Hb_097218_010--Hb_007558_070 Hb_023226_080 Hb_023226_080 Hb_097218_010--Hb_023226_080 Hb_128743_010 Hb_128743_010 Hb_097218_010--Hb_128743_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89784 23.3466 9.01285 15.5218 46.0522 7.80823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91398 11.0557 11.6698 17.4188 13.8515

CAGE analysis