Hb_000191_020

Information

Type -
Description -
Location Contig191: 41468-41998
Sequence    

Annotation

kegg
ID rcu:RCOM_1246940
description hypothetical protein
nr
ID XP_002527720.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LZ60
description Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana GN=SMR3 PE=2 SV=1
trembl
ID B9SP01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1246940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000035_430 0.0947102317 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
3 Hb_089100_020 0.1241118602 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
4 Hb_024714_060 0.1263886532 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
5 Hb_000896_120 0.1326834006 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
6 Hb_001604_030 0.1385225832 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
7 Hb_001268_080 0.1396396922 - - catalytic, putative [Ricinus communis]
8 Hb_001006_180 0.1402684124 - - PREDICTED: endonuclease V-like [Jatropha curcas]
9 Hb_000742_270 0.1414391389 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
10 Hb_006831_030 0.1420805104 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
11 Hb_001507_070 0.1428017766 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001785_040 0.1439179334 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
13 Hb_011316_060 0.1453521607 - - alpha-l-fucosidase, putative [Ricinus communis]
14 Hb_001687_040 0.1477944739 - - actin-depolymerizing factor [Hevea brasiliensis]
15 Hb_089100_030 0.1498569546 - - -
16 Hb_002603_150 0.1521282602 - - PREDICTED: protein yippee-like [Jatropha curcas]
17 Hb_078633_010 0.1551895786 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
18 Hb_001232_140 0.1581349685 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
19 Hb_005663_120 0.159886907 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
20 Hb_006573_220 0.1602349297 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000191_020 Hb_000191_020 Hb_000035_430 Hb_000035_430 Hb_000191_020--Hb_000035_430 Hb_089100_020 Hb_089100_020 Hb_000191_020--Hb_089100_020 Hb_024714_060 Hb_024714_060 Hb_000191_020--Hb_024714_060 Hb_000896_120 Hb_000896_120 Hb_000191_020--Hb_000896_120 Hb_001604_030 Hb_001604_030 Hb_000191_020--Hb_001604_030 Hb_001268_080 Hb_001268_080 Hb_000191_020--Hb_001268_080 Hb_007140_020 Hb_007140_020 Hb_000035_430--Hb_007140_020 Hb_001687_040 Hb_001687_040 Hb_000035_430--Hb_001687_040 Hb_000035_430--Hb_001604_030 Hb_000027_150 Hb_000027_150 Hb_000035_430--Hb_000027_150 Hb_000012_130 Hb_000012_130 Hb_000035_430--Hb_000012_130 Hb_001785_040 Hb_001785_040 Hb_089100_020--Hb_001785_040 Hb_000696_220 Hb_000696_220 Hb_089100_020--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_089100_020--Hb_000853_240 Hb_003198_010 Hb_003198_010 Hb_089100_020--Hb_003198_010 Hb_003181_050 Hb_003181_050 Hb_089100_020--Hb_003181_050 Hb_001006_180 Hb_001006_180 Hb_024714_060--Hb_001006_180 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_024714_060--Hb_000012_130 Hb_001762_060 Hb_001762_060 Hb_024714_060--Hb_001762_060 Hb_007594_120 Hb_007594_120 Hb_024714_060--Hb_007594_120 Hb_006831_030 Hb_006831_030 Hb_024714_060--Hb_006831_030 Hb_183086_040 Hb_183086_040 Hb_000896_120--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000896_120--Hb_000922_100 Hb_000300_390 Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_000215_180 Hb_000215_180 Hb_000896_120--Hb_000215_180 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_001604_030--Hb_001785_040 Hb_023386_010 Hb_023386_010 Hb_001604_030--Hb_023386_010 Hb_000012_100 Hb_000012_100 Hb_001604_030--Hb_000012_100 Hb_000789_110 Hb_000789_110 Hb_001604_030--Hb_000789_110 Hb_000260_200 Hb_000260_200 Hb_001604_030--Hb_000260_200 Hb_002603_150 Hb_002603_150 Hb_001604_030--Hb_002603_150 Hb_000367_280 Hb_000367_280 Hb_001268_080--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_001268_080--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_001268_080--Hb_078633_010 Hb_011245_020 Hb_011245_020 Hb_001268_080--Hb_011245_020 Hb_001268_080--Hb_006831_030 Hb_004297_040 Hb_004297_040 Hb_001268_080--Hb_004297_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47277 0.44572 1.08765 2.13082 0.420648 1.57966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.4298 9.09144 7.05342 0.751977 0.181191

CAGE analysis