Hb_000191_030

Information

Type -
Description -
Location Contig191: 44484-49218
Sequence    

Annotation

kegg
ID tcc:TCM_037370
description Ribosomal protein S3 family protein
nr
ID XP_006376836.1
description hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
swissprot
ID Q9FJA6
description 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1
trembl
ID U5FTU5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07830g PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s3-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_030 0.0 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
2 Hb_000451_060 0.0625843291 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
3 Hb_004871_020 0.1097766107 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
4 Hb_153544_010 0.1102408253 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
5 Hb_019516_100 0.1107001088 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_000317_070 0.1124687582 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
7 Hb_000111_340 0.1149960134 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
8 Hb_002588_010 0.115257187 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
9 Hb_001304_140 0.1184541648 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
10 Hb_126861_010 0.1192855036 - - hypothetical protein M569_05914, partial [Genlisea aurea]
11 Hb_002248_100 0.1211444254 - - hypothetical protein VITISV_027197 [Vitis vinifera]
12 Hb_000062_390 0.1216286283 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
13 Hb_000172_420 0.1228052245 - - 60S ribosomal protein L30, putative [Ricinus communis]
14 Hb_076693_040 0.1228719447 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
15 Hb_000159_070 0.1242826258 - - JHL03K20.4 [Jatropha curcas]
16 Hb_010815_030 0.1251798135 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
17 Hb_001221_310 0.1255404511 - - sec61 gamma subunit, putative [Ricinus communis]
18 Hb_004052_020 0.1260046332 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
19 Hb_000735_040 0.1278541065 - - 60S ribosomal protein L32A [Hevea brasiliensis]
20 Hb_007944_040 0.128148263 - - 60S ribosomal protein L18aB [Hevea brasiliensis]

Gene co-expression network

sample Hb_000191_030 Hb_000191_030 Hb_000451_060 Hb_000451_060 Hb_000191_030--Hb_000451_060 Hb_004871_020 Hb_004871_020 Hb_000191_030--Hb_004871_020 Hb_153544_010 Hb_153544_010 Hb_000191_030--Hb_153544_010 Hb_019516_100 Hb_019516_100 Hb_000191_030--Hb_019516_100 Hb_000317_070 Hb_000317_070 Hb_000191_030--Hb_000317_070 Hb_000111_340 Hb_000111_340 Hb_000191_030--Hb_000111_340 Hb_000451_060--Hb_004871_020 Hb_004052_020 Hb_004052_020 Hb_000451_060--Hb_004052_020 Hb_000451_060--Hb_153544_010 Hb_000451_060--Hb_000317_070 Hb_001221_310 Hb_001221_310 Hb_000451_060--Hb_001221_310 Hb_004871_020--Hb_000317_070 Hb_004871_020--Hb_153544_010 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290 Hb_153544_010--Hb_000030_290 Hb_153544_010--Hb_000317_070 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_000042_260 Hb_000042_260 Hb_019516_100--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_019516_100--Hb_002588_010 Hb_001158_230 Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_172221_010 Hb_172221_010 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020 Hb_000317_070--Hb_007441_300 Hb_174865_010 Hb_174865_010 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_007944_040 Hb_007944_040 Hb_000111_340--Hb_007944_040 Hb_000334_210 Hb_000334_210 Hb_000111_340--Hb_000334_210 Hb_010672_060 Hb_010672_060 Hb_000111_340--Hb_010672_060 Hb_000111_340--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_000111_340--Hb_007304_070 Hb_003656_070 Hb_003656_070 Hb_000111_340--Hb_003656_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.09701 2.70479 6.44105 4.63758 5.80479 3.43715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9554 27.4325 5.59782 6.40737 1.91521

CAGE analysis