Hb_000191_130

Information

Type -
Description -
Location Contig191: 144999-168029
Sequence    

Annotation

kegg
ID rcu:RCOM_0712290
description tpr repeat nuclear phosphoprotein, putative
nr
ID XP_012077030.1
description PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
swissprot
ID B5X0I6
description Protein CTR9 homolog OS=Arabidopsis thaliana GN=VIP6 PE=1 SV=1
trembl
ID A0A067KQ03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07475 PE=4 SV=1
Gene Ontology
ID GO:0016020
description rna polymerase-associated protein ctr9 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19038: 144934-153202 , PASA_asmbl_19040: 153204-155177 , PASA_asmbl_19041: 155312-162868 , PASA_asmbl_19042: 162884-167843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_130 0.0 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
2 Hb_000062_470 0.0421529316 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
3 Hb_000917_160 0.0476507075 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
4 Hb_004429_160 0.0492670812 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
5 Hb_000010_360 0.0560400341 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
6 Hb_000640_310 0.0576859713 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
7 Hb_000032_010 0.0604170895 - - crooked neck protein, putative [Ricinus communis]
8 Hb_000406_230 0.0607478067 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
9 Hb_007558_070 0.0609480808 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
10 Hb_003040_020 0.0638696995 - - PREDICTED: protein cereblon [Jatropha curcas]
11 Hb_118840_050 0.0656547223 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
12 Hb_001307_080 0.0674682438 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
13 Hb_005260_010 0.06973725 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
14 Hb_023344_010 0.0702096933 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
15 Hb_000960_050 0.0719949752 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
16 Hb_001799_050 0.0752489793 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
17 Hb_000661_200 0.0756405141 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
18 Hb_001021_200 0.0779638503 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
19 Hb_010417_060 0.0780427205 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
20 Hb_003633_070 0.0793991944 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]

Gene co-expression network

sample Hb_000191_130 Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_000191_130--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_000191_130--Hb_000917_160 Hb_004429_160 Hb_004429_160 Hb_000191_130--Hb_004429_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_000062_470--Hb_000917_160 Hb_010417_060 Hb_010417_060 Hb_000062_470--Hb_010417_060 Hb_000661_200 Hb_000661_200 Hb_000062_470--Hb_000661_200 Hb_000062_470--Hb_004429_160 Hb_007813_030 Hb_007813_030 Hb_000062_470--Hb_007813_030 Hb_118840_050 Hb_118840_050 Hb_000917_160--Hb_118840_050 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_000917_160--Hb_010417_060 Hb_003040_020 Hb_003040_020 Hb_004429_160--Hb_003040_020 Hb_004429_160--Hb_000032_010 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000935_090 Hb_000935_090 Hb_004429_160--Hb_000935_090 Hb_000010_360--Hb_000406_230 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_023344_010 Hb_023344_010 Hb_000010_360--Hb_023344_010 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020 Hb_001799_050 Hb_001799_050 Hb_000640_310--Hb_001799_050 Hb_000556_170 Hb_000556_170 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_000640_310--Hb_023344_010 Hb_019153_020 Hb_019153_020 Hb_000032_010--Hb_019153_020 Hb_000032_010--Hb_003040_020 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000856_140 Hb_000856_140 Hb_000032_010--Hb_000856_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8955 24.0933 12.9467 10.4387 24.6112 17.5121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.38513 7.44209 5.91545 14.6576 11.331

CAGE analysis