Hb_000191_140

Information

Type -
Description -
Location Contig191: 177997-179379
Sequence    

Annotation

kegg
ID pop:POPTR_0018s07140g
description hypothetical protein
nr
ID XP_012077032.1
description PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q6AWY6
description Growth-regulating factor 3 OS=Oryza sativa subsp. japonica GN=GRF3 PE=3 SV=2
trembl
ID A0A067KNN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07476 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19043: 177808-178190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_140 0.0 - - PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
2 Hb_118283_010 0.1788957185 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001195_130 0.1811231031 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005144_170 0.1814316856 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
5 Hb_017439_010 0.1867405596 - - putative actin-97 protein [Linum usitatissimum]
6 Hb_012286_060 0.1932088028 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
7 Hb_000932_050 0.1965942452 - - annexin [Manihot esculenta]
8 Hb_000853_180 0.1966963026 - - kinesin heavy chain, putative [Ricinus communis]
9 Hb_003055_090 0.1967907573 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
10 Hb_000977_200 0.2000601073 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
11 Hb_002267_060 0.20071519 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
12 Hb_005348_150 0.2031510871 - - PREDICTED: actin-100-like [Jatropha curcas]
13 Hb_003580_010 0.204038226 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
14 Hb_000963_050 0.2104986862 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
15 Hb_000856_400 0.2115498353 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
16 Hb_005116_090 0.2125021312 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000879_170 0.212937923 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
18 Hb_006816_240 0.2129546763 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
19 Hb_020805_040 0.213222506 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
20 Hb_000321_170 0.2153940426 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000191_140 Hb_000191_140 Hb_118283_010 Hb_118283_010 Hb_000191_140--Hb_118283_010 Hb_001195_130 Hb_001195_130 Hb_000191_140--Hb_001195_130 Hb_005144_170 Hb_005144_170 Hb_000191_140--Hb_005144_170 Hb_017439_010 Hb_017439_010 Hb_000191_140--Hb_017439_010 Hb_012286_060 Hb_012286_060 Hb_000191_140--Hb_012286_060 Hb_000932_050 Hb_000932_050 Hb_000191_140--Hb_000932_050 Hb_020805_040 Hb_020805_040 Hb_118283_010--Hb_020805_040 Hb_000544_200 Hb_000544_200 Hb_118283_010--Hb_000544_200 Hb_000963_050 Hb_000963_050 Hb_118283_010--Hb_000963_050 Hb_118283_010--Hb_012286_060 Hb_004586_040 Hb_004586_040 Hb_118283_010--Hb_004586_040 Hb_003688_010 Hb_003688_010 Hb_118283_010--Hb_003688_010 Hb_001847_050 Hb_001847_050 Hb_001195_130--Hb_001847_050 Hb_001579_300 Hb_001579_300 Hb_001195_130--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_001195_130--Hb_006925_050 Hb_000856_400 Hb_000856_400 Hb_001195_130--Hb_000856_400 Hb_004730_020 Hb_004730_020 Hb_001195_130--Hb_004730_020 Hb_009222_110 Hb_009222_110 Hb_001195_130--Hb_009222_110 Hb_004117_330 Hb_004117_330 Hb_005144_170--Hb_004117_330 Hb_001143_230 Hb_001143_230 Hb_005144_170--Hb_001143_230 Hb_002774_120 Hb_002774_120 Hb_005144_170--Hb_002774_120 Hb_002490_030 Hb_002490_030 Hb_005144_170--Hb_002490_030 Hb_000413_080 Hb_000413_080 Hb_005144_170--Hb_000413_080 Hb_002498_030 Hb_002498_030 Hb_017439_010--Hb_002498_030 Hb_001401_040 Hb_001401_040 Hb_017439_010--Hb_001401_040 Hb_003055_090 Hb_003055_090 Hb_017439_010--Hb_003055_090 Hb_001268_160 Hb_001268_160 Hb_017439_010--Hb_001268_160 Hb_010889_010 Hb_010889_010 Hb_017439_010--Hb_010889_010 Hb_000328_010 Hb_000328_010 Hb_017439_010--Hb_000328_010 Hb_000030_020 Hb_000030_020 Hb_012286_060--Hb_000030_020 Hb_012286_060--Hb_000963_050 Hb_005348_150 Hb_005348_150 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010 Hb_143629_120 Hb_143629_120 Hb_012286_060--Hb_143629_120 Hb_001450_040 Hb_001450_040 Hb_000932_050--Hb_001450_040 Hb_003408_010 Hb_003408_010 Hb_000932_050--Hb_003408_010 Hb_000932_050--Hb_000856_400 Hb_000023_110 Hb_000023_110 Hb_000932_050--Hb_000023_110 Hb_000932_050--Hb_010889_010 Hb_064546_010 Hb_064546_010 Hb_000932_050--Hb_064546_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169919 0.0470854 0.653047 1.0783 0.0176906 0.0401292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.086304 0.0678855 0 0.0408317 0.210115

CAGE analysis