Hb_000191_150

Information

Type -
Description -
Location Contig191: 183410-194016
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14550g
description hypothetical protein
nr
ID XP_012077033.1
description PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
swissprot
ID Q6NXD8
description DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2
trembl
ID B9MSY2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14550g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19044: 183438-193993 , PASA_asmbl_19045: 183438-192865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_150 0.0 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
2 Hb_000116_410 0.0732976656 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
3 Hb_002903_060 0.0821559974 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
4 Hb_000343_120 0.0846256655 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
5 Hb_123352_020 0.0850757987 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
6 Hb_000205_100 0.0852541446 - - PREDICTED: exportin-4 [Jatropha curcas]
7 Hb_005731_130 0.0858189103 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
8 Hb_004032_150 0.0862748348 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
9 Hb_000099_080 0.0868333054 - - kinesin light chain, putative [Ricinus communis]
10 Hb_000853_350 0.0874260444 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
11 Hb_000225_040 0.0884663527 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
12 Hb_000173_490 0.0886778804 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
13 Hb_005048_130 0.0887274386 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
14 Hb_000193_190 0.0889197767 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
15 Hb_001912_100 0.0901404546 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
16 Hb_007254_070 0.0904948246 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
17 Hb_000366_120 0.0909829446 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
18 Hb_000395_190 0.0910393256 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
19 Hb_004767_100 0.0910876369 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_003952_070 0.0912687366 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000191_150 Hb_000191_150 Hb_000116_410 Hb_000116_410 Hb_000191_150--Hb_000116_410 Hb_002903_060 Hb_002903_060 Hb_000191_150--Hb_002903_060 Hb_000343_120 Hb_000343_120 Hb_000191_150--Hb_000343_120 Hb_123352_020 Hb_123352_020 Hb_000191_150--Hb_123352_020 Hb_000205_100 Hb_000205_100 Hb_000191_150--Hb_000205_100 Hb_005731_130 Hb_005731_130 Hb_000191_150--Hb_005731_130 Hb_001635_090 Hb_001635_090 Hb_000116_410--Hb_001635_090 Hb_010142_030 Hb_010142_030 Hb_000116_410--Hb_010142_030 Hb_004143_040 Hb_004143_040 Hb_000116_410--Hb_004143_040 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_028285_010 Hb_028285_010 Hb_000116_410--Hb_028285_010 Hb_007254_070 Hb_007254_070 Hb_002903_060--Hb_007254_070 Hb_000245_040 Hb_000245_040 Hb_002903_060--Hb_000245_040 Hb_000028_280 Hb_000028_280 Hb_002903_060--Hb_000028_280 Hb_002213_070 Hb_002213_070 Hb_002903_060--Hb_002213_070 Hb_011485_070 Hb_011485_070 Hb_002903_060--Hb_011485_070 Hb_000166_130 Hb_000166_130 Hb_000343_120--Hb_000166_130 Hb_000035_290 Hb_000035_290 Hb_000343_120--Hb_000035_290 Hb_000343_120--Hb_000028_280 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_001199_100 Hb_001199_100 Hb_000343_120--Hb_001199_100 Hb_003029_110 Hb_003029_110 Hb_000343_120--Hb_003029_110 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_000487_290 Hb_000487_290 Hb_123352_020--Hb_000487_290 Hb_007163_090 Hb_007163_090 Hb_123352_020--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_005731_030 Hb_005731_030 Hb_123352_020--Hb_005731_030 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260 Hb_000193_190 Hb_000193_190 Hb_000205_100--Hb_000193_190 Hb_001946_010 Hb_001946_010 Hb_000205_100--Hb_001946_010 Hb_000205_100--Hb_000225_040 Hb_000613_050 Hb_000613_050 Hb_000205_100--Hb_000613_050 Hb_004689_050 Hb_004689_050 Hb_000205_100--Hb_004689_050 Hb_000205_100--Hb_001178_070 Hb_000395_190 Hb_000395_190 Hb_005731_130--Hb_000395_190 Hb_000260_270 Hb_000260_270 Hb_005731_130--Hb_000260_270 Hb_010128_080 Hb_010128_080 Hb_005731_130--Hb_010128_080 Hb_000061_460 Hb_000061_460 Hb_005731_130--Hb_000061_460 Hb_089032_040 Hb_089032_040 Hb_005731_130--Hb_089032_040 Hb_005731_130--Hb_001143_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.69782 15.2766 4.2193 11.4095 15.1648 17.2804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8124 13.5615 11.0899 12.7639 6.33861

CAGE analysis