Hb_000192_020

Information

Type -
Description -
Location Contig192: 19932-21567
Sequence    

Annotation

kegg
ID cit:102625106
description uncharacterized LOC102625106
nr
ID KDP45744.1
description hypothetical protein JCGZ_17351 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17351 PE=4 SV=1
Gene Ontology
ID GO:0007126
description hypothetical protein JCGZ_17351

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19134: 19055-19169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000192_020 0.0 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
2 Hb_003304_110 0.1519479661 - - conserved hypothetical protein [Ricinus communis]
3 Hb_029920_020 0.1782047578 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
4 Hb_000217_010 0.179908578 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
5 Hb_000260_280 0.1867904029 - - auxin:hydrogen symporter, putative [Ricinus communis]
6 Hb_002743_040 0.1937077533 - - PREDICTED: uncharacterized protein LOC105785507 isoform X2 [Gossypium raimondii]
7 Hb_012753_030 0.2035366036 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
8 Hb_001486_270 0.2060988869 - - Ann10 [Manihot esculenta]
9 Hb_001989_100 0.211188407 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
10 Hb_002320_080 0.214780684 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
11 Hb_000210_100 0.2312651566 - - pepsin A, putative [Ricinus communis]
12 Hb_020805_140 0.2390883489 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
13 Hb_000094_200 0.2465934962 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000345_080 0.2480916072 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
15 Hb_000258_060 0.2497072876 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001454_100 0.2544962257 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
17 Hb_001635_010 0.2564947539 - - -
18 Hb_000754_070 0.2613150867 - - conserved hypothetical protein [Ricinus communis]
19 Hb_175933_010 0.2633497213 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
20 Hb_132840_070 0.2634955413 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_000192_020 Hb_000192_020 Hb_003304_110 Hb_003304_110 Hb_000192_020--Hb_003304_110 Hb_029920_020 Hb_029920_020 Hb_000192_020--Hb_029920_020 Hb_000217_010 Hb_000217_010 Hb_000192_020--Hb_000217_010 Hb_000260_280 Hb_000260_280 Hb_000192_020--Hb_000260_280 Hb_002743_040 Hb_002743_040 Hb_000192_020--Hb_002743_040 Hb_012753_030 Hb_012753_030 Hb_000192_020--Hb_012753_030 Hb_000345_080 Hb_000345_080 Hb_003304_110--Hb_000345_080 Hb_020805_140 Hb_020805_140 Hb_003304_110--Hb_020805_140 Hb_000094_200 Hb_000094_200 Hb_003304_110--Hb_000094_200 Hb_000438_120 Hb_000438_120 Hb_003304_110--Hb_000438_120 Hb_000107_350 Hb_000107_350 Hb_003304_110--Hb_000107_350 Hb_002320_080 Hb_002320_080 Hb_029920_020--Hb_002320_080 Hb_029920_020--Hb_000260_280 Hb_029920_020--Hb_012753_030 Hb_001454_100 Hb_001454_100 Hb_029920_020--Hb_001454_100 Hb_001486_270 Hb_001486_270 Hb_029920_020--Hb_001486_270 Hb_000240_100 Hb_000240_100 Hb_000217_010--Hb_000240_100 Hb_000217_010--Hb_000260_280 Hb_175933_010 Hb_175933_010 Hb_000217_010--Hb_175933_010 Hb_000217_010--Hb_029920_020 Hb_032972_010 Hb_032972_010 Hb_000217_010--Hb_032972_010 Hb_000260_280--Hb_032972_010 Hb_025466_020 Hb_025466_020 Hb_000260_280--Hb_025466_020 Hb_000210_100 Hb_000210_100 Hb_000260_280--Hb_000210_100 Hb_000260_280--Hb_001454_100 Hb_006903_030 Hb_006903_030 Hb_000260_280--Hb_006903_030 Hb_132840_070 Hb_132840_070 Hb_002743_040--Hb_132840_070 Hb_069696_010 Hb_069696_010 Hb_002743_040--Hb_069696_010 Hb_002743_040--Hb_003304_110 Hb_002743_040--Hb_002320_080 Hb_006938_050 Hb_006938_050 Hb_002743_040--Hb_006938_050 Hb_001208_030 Hb_001208_030 Hb_012753_030--Hb_001208_030 Hb_001584_240 Hb_001584_240 Hb_012753_030--Hb_001584_240 Hb_012753_030--Hb_001486_270 Hb_012753_030--Hb_175933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.25635 2.66209 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.560112 0.879883 0.711465 0.31221 0.782008

CAGE analysis