Hb_000193_070

Information

Type -
Description -
Location Contig193: 47036-54369
Sequence    

Annotation

kegg
ID vvi:100251269
description protein MID1-COMPLEMENTING ACTIVITY 1
nr
ID KDP23985.1
description hypothetical protein JCGZ_25373 [Jatropha curcas]
swissprot
ID Q8L7E9
description Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana GN=MCA1 PE=1 SV=1
trembl
ID A0A067JVG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25373 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19224: 46548-54311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_070 0.0 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
2 Hb_000152_570 0.0482430818 - - 21 kDa protein precursor, putative [Ricinus communis]
3 Hb_002391_240 0.0557663127 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000103_300 0.0564711158 - - PREDICTED: perakine reductase-like [Jatropha curcas]
5 Hb_002284_060 0.0696458101 - - sugar transporter, putative [Ricinus communis]
6 Hb_006154_010 0.0775798387 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
7 Hb_169077_030 0.0808417266 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
8 Hb_003376_140 0.0829726681 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
9 Hb_012395_060 0.093006935 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
10 Hb_002518_230 0.0952037939 - - -
11 Hb_004466_090 0.0953862816 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007370_010 0.0977129558 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
13 Hb_003894_180 0.1024395691 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
14 Hb_001079_050 0.1045753262 - - Calmodulin, putative [Ricinus communis]
15 Hb_113766_010 0.1095676506 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
16 Hb_004374_030 0.1124845305 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_000364_090 0.1150693878 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
18 Hb_016277_030 0.1157424106 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
19 Hb_141194_020 0.1157943477 - - carbohydrate transporter, putative [Ricinus communis]
20 Hb_001410_080 0.1169340337 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000193_070 Hb_000193_070 Hb_000152_570 Hb_000152_570 Hb_000193_070--Hb_000152_570 Hb_002391_240 Hb_002391_240 Hb_000193_070--Hb_002391_240 Hb_000103_300 Hb_000103_300 Hb_000193_070--Hb_000103_300 Hb_002284_060 Hb_002284_060 Hb_000193_070--Hb_002284_060 Hb_006154_010 Hb_006154_010 Hb_000193_070--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_000193_070--Hb_169077_030 Hb_000152_570--Hb_000103_300 Hb_000152_570--Hb_002284_060 Hb_000152_570--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_007370_010 Hb_007370_010 Hb_000152_570--Hb_007370_010 Hb_002391_240--Hb_000103_300 Hb_002391_240--Hb_002284_060 Hb_113766_010 Hb_113766_010 Hb_002391_240--Hb_113766_010 Hb_002391_240--Hb_007370_010 Hb_000103_300--Hb_002284_060 Hb_000103_300--Hb_006154_010 Hb_000103_300--Hb_169077_030 Hb_004466_090 Hb_004466_090 Hb_002284_060--Hb_004466_090 Hb_002284_060--Hb_003894_180 Hb_001079_050 Hb_001079_050 Hb_006154_010--Hb_001079_050 Hb_003376_140 Hb_003376_140 Hb_006154_010--Hb_003376_140 Hb_006154_010--Hb_169077_030 Hb_006154_010--Hb_000152_570 Hb_169077_030--Hb_007370_010 Hb_012395_060 Hb_012395_060 Hb_169077_030--Hb_012395_060 Hb_169077_030--Hb_000152_570 Hb_005332_160 Hb_005332_160 Hb_169077_030--Hb_005332_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385208 5.61145 9.85311 40.3965 0.15192 0.0462233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.02862 23.8829

CAGE analysis