Hb_000193_110

Information

Type -
Description -
Location Contig193: 85696-88872
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02020g
description POPTRDRAFT_813631; hypothetical protein
nr
ID XP_012088486.1
description PREDICTED: SKP1-like protein 1B [Jatropha curcas]
swissprot
ID Q9FHW7
description SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1
trembl
ID A9PDK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02020g PE=2 SV=1
Gene Ontology
ID GO:0016301
description skp1-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19225: 85811-88820 , PASA_asmbl_19228: 88020-88367 , PASA_asmbl_19229: 87649-87779
cDNA
(Sanger)
(ID:Location)		 026_A12.ab1: 88299-88698 , 026_C19.ab1: 85811-88506 , 041_G04.ab1: 85915-88611 , 053_C13.ab1: 85811-88597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_110 0.0 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
2 Hb_000622_180 0.0626978899 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
3 Hb_000115_220 0.0731357311 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
4 Hb_011512_070 0.0767420964 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
5 Hb_000457_180 0.077765381 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
6 Hb_012565_070 0.0817941347 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_021068_040 0.0831665934 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
8 Hb_000367_160 0.0856466392 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
9 Hb_000205_090 0.08661602 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
10 Hb_018133_020 0.0877589993 - - transporter, putative [Ricinus communis]
11 Hb_008071_020 0.088890164 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
12 Hb_000155_200 0.0891703764 - - Rab7 [Hevea brasiliensis]
13 Hb_000527_060 0.0911778152 - - Protein C20orf11, putative [Ricinus communis]
14 Hb_026053_020 0.0913485493 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
15 Hb_000236_390 0.0916577046 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
16 Hb_000529_030 0.092132909 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001341_150 0.0923165633 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
18 Hb_000035_370 0.0927012692 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001195_480 0.0930122257 - - cop9 complex subunit, putative [Ricinus communis]
20 Hb_002226_060 0.0930985597 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_110 Hb_000193_110 Hb_000622_180 Hb_000622_180 Hb_000193_110--Hb_000622_180 Hb_000115_220 Hb_000115_220 Hb_000193_110--Hb_000115_220 Hb_011512_070 Hb_011512_070 Hb_000193_110--Hb_011512_070 Hb_000457_180 Hb_000457_180 Hb_000193_110--Hb_000457_180 Hb_012565_070 Hb_012565_070 Hb_000193_110--Hb_012565_070 Hb_021068_040 Hb_021068_040 Hb_000193_110--Hb_021068_040 Hb_029388_020 Hb_029388_020 Hb_000622_180--Hb_029388_020 Hb_001195_480 Hb_001195_480 Hb_000622_180--Hb_001195_480 Hb_000236_390 Hb_000236_390 Hb_000622_180--Hb_000236_390 Hb_000622_180--Hb_021068_040 Hb_002685_040 Hb_002685_040 Hb_000622_180--Hb_002685_040 Hb_000527_060 Hb_000527_060 Hb_000115_220--Hb_000527_060 Hb_010175_040 Hb_010175_040 Hb_000115_220--Hb_010175_040 Hb_000261_140 Hb_000261_140 Hb_000115_220--Hb_000261_140 Hb_000035_370 Hb_000035_370 Hb_000115_220--Hb_000035_370 Hb_003992_270 Hb_003992_270 Hb_000115_220--Hb_003992_270 Hb_000656_240 Hb_000656_240 Hb_011512_070--Hb_000656_240 Hb_002226_060 Hb_002226_060 Hb_011512_070--Hb_002226_060 Hb_000529_030 Hb_000529_030 Hb_011512_070--Hb_000529_030 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_001341_150 Hb_001341_150 Hb_000457_180--Hb_001341_150 Hb_003362_030 Hb_003362_030 Hb_000457_180--Hb_003362_030 Hb_008071_020 Hb_008071_020 Hb_000457_180--Hb_008071_020 Hb_000457_180--Hb_012565_070 Hb_001279_080 Hb_001279_080 Hb_000457_180--Hb_001279_080 Hb_150651_040 Hb_150651_040 Hb_000457_180--Hb_150651_040 Hb_000300_260 Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_001863_380 Hb_001863_380 Hb_012565_070--Hb_001863_380 Hb_002307_180 Hb_002307_180 Hb_012565_070--Hb_002307_180 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170 Hb_000805_240 Hb_000805_240 Hb_021068_040--Hb_000805_240 Hb_005846_040 Hb_005846_040 Hb_021068_040--Hb_005846_040 Hb_006615_240 Hb_006615_240 Hb_021068_040--Hb_006615_240 Hb_021068_040--Hb_000205_090 Hb_003582_060 Hb_003582_060 Hb_021068_040--Hb_003582_060 Hb_003151_040 Hb_003151_040 Hb_021068_040--Hb_003151_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.299 112.208 202.77 137.241 91.1689 73.3172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
209.244 319.227 156.156 85.0898 99.0958

CAGE analysis