Hb_000193_120

Information

Type -
Description -
Location Contig193: 89642-90535
Sequence    

Annotation

kegg
ID rcu:RCOM_0362130
description Protein preY, mitochondrial precursor, putative
nr
ID XP_012088484.1
description PREDICTED: protein preY, mitochondrial [Jatropha curcas]
swissprot
ID Q5M8Z2
description Protein preY, mitochondrial OS=Xenopus tropicalis GN=pyurf PE=2 SV=1
trembl
ID A0A067JVF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25368 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19225: 85811-88820 , PASA_asmbl_19231: 89775-90559
cDNA
(Sanger)
(ID:Location)		 026_A12.ab1: 88299-88698 , 044_H01.ab1: 89775-90400

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_120 0.0 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
2 Hb_000181_300 0.0508886747 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
3 Hb_000103_010 0.0533647907 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
4 Hb_000012_100 0.0622490415 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
5 Hb_004156_040 0.0654638763 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
6 Hb_001634_040 0.0745327371 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
7 Hb_001016_090 0.0768397676 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
8 Hb_002374_390 0.0794262124 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
9 Hb_003053_030 0.0794459847 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
10 Hb_001085_120 0.0801114392 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
11 Hb_005391_030 0.0804153451 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
12 Hb_148200_010 0.0805474421 - - hypothetical protein 33 [Hevea brasiliensis]
13 Hb_001085_270 0.0807370231 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
14 Hb_000567_410 0.082933189 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
15 Hb_017948_010 0.0829716381 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
16 Hb_005181_030 0.0840962705 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_003326_020 0.0847217359 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
18 Hb_001076_020 0.0848415542 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
19 Hb_000062_390 0.0849785766 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
20 Hb_000224_140 0.0886653732 - - ribonuclease z, chloroplast, putative [Ricinus communis]

Gene co-expression network

sample Hb_000193_120 Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_000193_120--Hb_000181_300 Hb_000103_010 Hb_000103_010 Hb_000193_120--Hb_000103_010 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_000181_300--Hb_000012_100 Hb_003053_030 Hb_003053_030 Hb_000181_300--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000181_300--Hb_000103_010 Hb_001085_120 Hb_001085_120 Hb_000103_010--Hb_001085_120 Hb_004375_140 Hb_004375_140 Hb_000103_010--Hb_004375_140 Hb_003077_040 Hb_003077_040 Hb_000103_010--Hb_003077_040 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030 Hb_000012_100--Hb_001634_040 Hb_000012_100--Hb_004156_040 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_148200_010 Hb_148200_010 Hb_004156_040--Hb_148200_010 Hb_004156_040--Hb_003053_030 Hb_004156_040--Hb_001191_090 Hb_004156_040--Hb_000181_300 Hb_007575_070 Hb_007575_070 Hb_001634_040--Hb_007575_070 Hb_000062_390 Hb_000062_390 Hb_001634_040--Hb_000062_390 Hb_000805_130 Hb_000805_130 Hb_001634_040--Hb_000805_130 Hb_001634_040--Hb_000181_300 Hb_032260_030 Hb_032260_030 Hb_001016_090--Hb_032260_030 Hb_001016_090--Hb_002374_390 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5049 6.70056 13.9831 11.9444 12.9935 13.4478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.1795 73.2334 40.1964 20.6582 11.1399

CAGE analysis