Hb_000193_130

Information

Type -
Description -
Location Contig193: 95517-95930
Sequence    

Annotation

kegg
ID rcu:RCOM_0362110
description nucleic acid binding protein, putative
nr
ID XP_002531146.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9M2S6
description E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1
trembl
ID B9SYS7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0362110 PE=4 SV=1
Gene Ontology
ID GO:0008270
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_130 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_009767_040 0.0691716777 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
3 Hb_000521_030 0.0775838696 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
4 Hb_057343_010 0.0782585304 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
5 Hb_002785_020 0.079084766 - - PREDICTED: laccase-4-like [Jatropha curcas]
6 Hb_000327_350 0.0794147023 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
7 Hb_003788_030 0.0974610724 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_000244_290 0.1014193961 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
9 Hb_180518_010 0.1044163765 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
10 Hb_000816_090 0.1044539081 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
11 Hb_000581_010 0.1054485045 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
12 Hb_000487_350 0.1061236459 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004449_100 0.106785665 - - -
14 Hb_027577_010 0.1070111507 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
15 Hb_002031_020 0.1074645633 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
16 Hb_003060_020 0.1097225564 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_000483_340 0.1102888446 - - conserved hypothetical protein [Ricinus communis]
18 Hb_031330_010 0.11037493 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
19 Hb_000645_230 0.1112507353 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
20 Hb_003528_090 0.1119371055 - - Uncharacterized protein TCM_037169 [Theobroma cacao]

Gene co-expression network

sample Hb_000193_130 Hb_000193_130 Hb_009767_040 Hb_009767_040 Hb_000193_130--Hb_009767_040 Hb_000521_030 Hb_000521_030 Hb_000193_130--Hb_000521_030 Hb_057343_010 Hb_057343_010 Hb_000193_130--Hb_057343_010 Hb_002785_020 Hb_002785_020 Hb_000193_130--Hb_002785_020 Hb_000327_350 Hb_000327_350 Hb_000193_130--Hb_000327_350 Hb_003788_030 Hb_003788_030 Hb_000193_130--Hb_003788_030 Hb_009767_040--Hb_000521_030 Hb_009767_040--Hb_002785_020 Hb_009767_040--Hb_003788_030 Hb_009767_040--Hb_000327_350 Hb_004449_100 Hb_004449_100 Hb_009767_040--Hb_004449_100 Hb_000521_030--Hb_000327_350 Hb_002757_040 Hb_002757_040 Hb_000521_030--Hb_002757_040 Hb_000521_030--Hb_002785_020 Hb_000816_090 Hb_000816_090 Hb_000521_030--Hb_000816_090 Hb_057343_010--Hb_004449_100 Hb_057343_010--Hb_009767_040 Hb_057343_010--Hb_000521_030 Hb_057343_010--Hb_000327_350 Hb_003528_090 Hb_003528_090 Hb_057343_010--Hb_003528_090 Hb_000684_190 Hb_000684_190 Hb_002785_020--Hb_000684_190 Hb_000645_230 Hb_000645_230 Hb_002785_020--Hb_000645_230 Hb_002785_020--Hb_003788_030 Hb_002734_020 Hb_002734_020 Hb_002785_020--Hb_002734_020 Hb_001935_200 Hb_001935_200 Hb_002785_020--Hb_001935_200 Hb_000422_090 Hb_000422_090 Hb_002785_020--Hb_000422_090 Hb_000327_350--Hb_000816_090 Hb_003060_020 Hb_003060_020 Hb_000327_350--Hb_003060_020 Hb_000327_350--Hb_003528_090 Hb_000318_500 Hb_000318_500 Hb_000327_350--Hb_000318_500 Hb_000244_290 Hb_000244_290 Hb_000327_350--Hb_000244_290 Hb_003788_030--Hb_001935_200 Hb_003788_030--Hb_000684_190 Hb_003788_030--Hb_000422_090 Hb_000696_130 Hb_000696_130 Hb_003788_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_003788_030--Hb_002636_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0789182 4.41542 2.80133 213.077 0.382879 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12022 0.293294 0.237155 1.31128 36.7544

CAGE analysis