Hb_000193_180

Information

Type transcription factor
Description TF Family: MYB
Location Contig193: 162963-165263
Sequence    

Annotation

kegg
ID osa:4345652
description Os08g0433400
nr
ID XP_012080553.1
description PREDICTED: transcription factor MYB28-like [Jatropha curcas]
swissprot
ID Q9FLR1
description Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1 SV=1
trembl
ID A0A067KHI0
description MYB family protein OS=Jatropha curcas GN=JCGZ_11650 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb domain 16-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19239: 163425-164747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_180 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
2 Hb_001766_130 0.0940952549 - - zinc finger protein, putative [Ricinus communis]
3 Hb_003893_130 0.0975473421 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_096027_010 0.1137588471 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_005675_070 0.1151637227 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
6 Hb_039946_060 0.1154653213 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
7 Hb_161103_010 0.1177889697 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_000161_140 0.1207527436 - - PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
9 Hb_000620_040 0.1217610214 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
10 Hb_000749_290 0.1222153089 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
11 Hb_010164_030 0.1227409176 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
12 Hb_185726_010 0.1234552685 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_006651_030 0.1235996925 - - unnamed protein product [Homo sapiens]
14 Hb_029977_030 0.1257899575 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
15 Hb_011853_020 0.1287836327 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
16 Hb_011909_050 0.1292319567 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
17 Hb_147006_010 0.129546724 - - receptor like protein 35 [Arabidopsis thaliana]
18 Hb_009070_020 0.1301327658 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
19 Hb_003054_070 0.1345845916 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
20 Hb_001427_100 0.1351230111 - - acc synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000193_180 Hb_000193_180 Hb_001766_130 Hb_001766_130 Hb_000193_180--Hb_001766_130 Hb_003893_130 Hb_003893_130 Hb_000193_180--Hb_003893_130 Hb_096027_010 Hb_096027_010 Hb_000193_180--Hb_096027_010 Hb_005675_070 Hb_005675_070 Hb_000193_180--Hb_005675_070 Hb_039946_060 Hb_039946_060 Hb_000193_180--Hb_039946_060 Hb_161103_010 Hb_161103_010 Hb_000193_180--Hb_161103_010 Hb_001766_130--Hb_096027_010 Hb_005762_010 Hb_005762_010 Hb_001766_130--Hb_005762_010 Hb_003339_010 Hb_003339_010 Hb_001766_130--Hb_003339_010 Hb_185726_010 Hb_185726_010 Hb_001766_130--Hb_185726_010 Hb_012670_090 Hb_012670_090 Hb_001766_130--Hb_012670_090 Hb_000230_300 Hb_000230_300 Hb_001766_130--Hb_000230_300 Hb_000620_040 Hb_000620_040 Hb_003893_130--Hb_000620_040 Hb_001541_210 Hb_001541_210 Hb_003893_130--Hb_001541_210 Hb_003032_030 Hb_003032_030 Hb_003893_130--Hb_003032_030 Hb_005741_030 Hb_005741_030 Hb_003893_130--Hb_005741_030 Hb_003893_130--Hb_005675_070 Hb_011853_020 Hb_011853_020 Hb_096027_010--Hb_011853_020 Hb_029977_030 Hb_029977_030 Hb_096027_010--Hb_029977_030 Hb_011618_110 Hb_011618_110 Hb_096027_010--Hb_011618_110 Hb_002636_120 Hb_002636_120 Hb_096027_010--Hb_002636_120 Hb_096027_010--Hb_000230_300 Hb_005211_210 Hb_005211_210 Hb_005675_070--Hb_005211_210 Hb_158189_010 Hb_158189_010 Hb_005675_070--Hb_158189_010 Hb_008689_010 Hb_008689_010 Hb_005675_070--Hb_008689_010 Hb_005675_070--Hb_001541_210 Hb_077774_010 Hb_077774_010 Hb_005675_070--Hb_077774_010 Hb_001427_100 Hb_001427_100 Hb_039946_060--Hb_001427_100 Hb_039946_060--Hb_005741_030 Hb_001405_170 Hb_001405_170 Hb_039946_060--Hb_001405_170 Hb_000020_210 Hb_000020_210 Hb_039946_060--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_039946_060--Hb_000012_350 Hb_003054_070 Hb_003054_070 Hb_039946_060--Hb_003054_070 Hb_008406_060 Hb_008406_060 Hb_161103_010--Hb_008406_060 Hb_011909_050 Hb_011909_050 Hb_161103_010--Hb_011909_050 Hb_006651_030 Hb_006651_030 Hb_161103_010--Hb_006651_030 Hb_001477_060 Hb_001477_060 Hb_161103_010--Hb_001477_060 Hb_007357_010 Hb_007357_010 Hb_161103_010--Hb_007357_010 Hb_000928_280 Hb_000928_280 Hb_161103_010--Hb_000928_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.323799 0.596746 1.1461 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0267211 0 0 0.724418

CAGE analysis