Hb_000193_190

Information

Type -
Description -
Location Contig193: 167431-178610
Sequence    

Annotation

kegg
ID rcu:RCOM_1471410
description heat shock protein binding protein, putative
nr
ID XP_012080294.1
description PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
swissprot
ID Q498R3
description DnaJ homolog subfamily C member 10 OS=Rattus norvegicus GN=Dnajc10 PE=2 SV=2
trembl
ID A0A067KGA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11651 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19242: 167452-178568 , PASA_asmbl_19243: 174285-174629
cDNA
(Sanger)
(ID:Location)		 007_E02r.ab1: 178813-181970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_190 0.0 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
2 Hb_000205_100 0.0409710556 - - PREDICTED: exportin-4 [Jatropha curcas]
3 Hb_000011_200 0.0509912536 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
4 Hb_001946_010 0.053089246 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_000225_040 0.054622536 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_007576_110 0.0593284767 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
7 Hb_011930_160 0.0602280983 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
8 Hb_003025_110 0.061623856 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
9 Hb_000347_070 0.0639467765 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000123_210 0.0650671893 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
11 Hb_103012_010 0.0655608843 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_003952_070 0.0659988902 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000023_220 0.0660619989 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
14 Hb_000190_120 0.0670885263 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
15 Hb_006827_020 0.0672450022 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003158_010 0.0673713554 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
17 Hb_001579_320 0.0702784633 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
18 Hb_000085_160 0.0708993749 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
19 Hb_106371_010 0.0709123333 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_001143_160 0.0711125073 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_190 Hb_000193_190 Hb_000205_100 Hb_000205_100 Hb_000193_190--Hb_000205_100 Hb_000011_200 Hb_000011_200 Hb_000193_190--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_000193_190--Hb_001946_010 Hb_000225_040 Hb_000225_040 Hb_000193_190--Hb_000225_040 Hb_007576_110 Hb_007576_110 Hb_000193_190--Hb_007576_110 Hb_011930_160 Hb_011930_160 Hb_000193_190--Hb_011930_160 Hb_000205_100--Hb_001946_010 Hb_000205_100--Hb_000225_040 Hb_000613_050 Hb_000613_050 Hb_000205_100--Hb_000613_050 Hb_004689_050 Hb_004689_050 Hb_000205_100--Hb_004689_050 Hb_001178_070 Hb_001178_070 Hb_000205_100--Hb_001178_070 Hb_000011_200--Hb_000225_040 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_103012_010 Hb_103012_010 Hb_001946_010--Hb_103012_010 Hb_000260_170 Hb_000260_170 Hb_001946_010--Hb_000260_170 Hb_001946_010--Hb_011930_160 Hb_003025_110 Hb_003025_110 Hb_001946_010--Hb_003025_110 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_014361_070 Hb_014361_070 Hb_007576_110--Hb_014361_070 Hb_000190_120 Hb_000190_120 Hb_007576_110--Hb_000190_120 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_011930_160--Hb_003163_020 Hb_004619_030 Hb_004619_030 Hb_011930_160--Hb_004619_030 Hb_011930_160--Hb_003025_110 Hb_011930_160--Hb_103012_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.878 12.0163 7.94041 12.3101 21.3306 20.2856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3511 13.114 13.6581 16.7749 10.5241

CAGE analysis