Hb_000193_200

Information

Type -
Description -
Location Contig193: 179201-182055
Sequence    

Annotation

kegg
ID rcu:RCOM_1471300
description rotamase, putative (EC:5.2.1.8)
nr
ID XP_002514732.1
description rotamase, putative [Ricinus communis]
swissprot
ID Q9Y237
description Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Homo sapiens GN=PIN4 PE=1 SV=1
trembl
ID B9RLW3
description Rotamase, putative OS=Ricinus communis GN=RCOM_1471300 PE=4 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase nima-interacting 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19244: 178813-182031 , PASA_asmbl_19245: 178813-182031
cDNA
(Sanger)
(ID:Location)		 007_E02.ab1: 178813-181961

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_200 0.0 - - rotamase, putative [Ricinus communis]
2 Hb_002107_120 0.0764300976 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
3 Hb_003376_130 0.0808222346 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
4 Hb_000069_100 0.0852250471 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000224_090 0.0868735705 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
6 Hb_003053_030 0.0922189633 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
7 Hb_012265_010 0.0927720414 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
8 Hb_148200_010 0.0938291135 - - hypothetical protein 33 [Hevea brasiliensis]
9 Hb_004156_040 0.0940395889 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
10 Hb_001545_060 0.0948310079 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
11 Hb_001616_060 0.0967176057 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
12 Hb_010172_030 0.1046987829 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
13 Hb_000212_260 0.1047367588 - - acyl-carrier-protein [Triadica sebifera]
14 Hb_000069_140 0.1054528982 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
15 Hb_002835_320 0.105591228 - - 60S ribosomal protein L27B [Hevea brasiliensis]
16 Hb_017862_010 0.1056535945 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
17 Hb_000329_330 0.1078662119 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
18 Hb_009421_040 0.1080055323 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
19 Hb_026048_070 0.1093422557 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
20 Hb_002097_060 0.1096934472 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_200 Hb_000193_200 Hb_002107_120 Hb_002107_120 Hb_000193_200--Hb_002107_120 Hb_003376_130 Hb_003376_130 Hb_000193_200--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000193_200--Hb_000069_100 Hb_000224_090 Hb_000224_090 Hb_000193_200--Hb_000224_090 Hb_003053_030 Hb_003053_030 Hb_000193_200--Hb_003053_030 Hb_012265_010 Hb_012265_010 Hb_000193_200--Hb_012265_010 Hb_002107_120--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_002107_120--Hb_148200_010 Hb_002107_120--Hb_003376_130 Hb_001268_140 Hb_001268_140 Hb_002107_120--Hb_001268_140 Hb_005211_190 Hb_005211_190 Hb_002107_120--Hb_005211_190 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_148930_010 Hb_148930_010 Hb_003376_130--Hb_148930_010 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_000224_090--Hb_003053_030 Hb_000224_090--Hb_000069_100 Hb_000163_130 Hb_000163_130 Hb_000224_090--Hb_000163_130 Hb_000722_040 Hb_000722_040 Hb_000224_090--Hb_000722_040 Hb_012539_020 Hb_012539_020 Hb_000224_090--Hb_012539_020 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_012265_010--Hb_003086_100 Hb_001433_050 Hb_001433_050 Hb_012265_010--Hb_001433_050 Hb_130291_010 Hb_130291_010 Hb_012265_010--Hb_130291_010 Hb_012265_010--Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.0693 4.67745 7.97165 14.5915 32.5387 35.2943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.295 119.512 69.2169 31.4416 22.9033

CAGE analysis