Hb_000193_220

Information

Type -
Description -
Location Contig193: 188618-193542
Sequence    

Annotation

kegg
ID tcc:TCM_014095
description D-ribulose-5-phosphate-3-epimerase isoform 1
nr
ID XP_012080298.1
description PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
swissprot
ID Q43843
description Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067K8F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11654 PE=4 SV=1
Gene Ontology
ID GO:0009570
description ribulose-phosphate 3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19248: 188635-193472 , PASA_asmbl_19249: 188662-193049 , PASA_asmbl_19250: 188693-190729 , PASA_asmbl_19251: 191170-191534
cDNA
(Sanger)
(ID:Location)		 004_L03.ab1: 188693-190729 , 005_F04.ab1: 188635-192179 , 014_H24.ab1: 188675-190491 , 020_O20.ab1: 188635-192157 , 022_O18.ab1: 188673-192117 , 031_C04.ab1: 188673-192186

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_220 0.0 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
2 Hb_010721_020 0.0470707667 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
3 Hb_002811_250 0.0683166554 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
4 Hb_000803_170 0.0804356857 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
5 Hb_007982_040 0.0867060591 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
6 Hb_000118_090 0.0890896497 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_000966_040 0.0979610755 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
8 Hb_000045_050 0.100290566 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
9 Hb_010098_040 0.1014888998 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
10 Hb_005181_120 0.1026201696 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000317_180 0.103588041 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
12 Hb_001907_080 0.1057271658 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
13 Hb_000032_390 0.1072684757 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
14 Hb_027298_020 0.1092341524 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
15 Hb_003494_030 0.1117458892 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
16 Hb_000703_070 0.1117582406 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
17 Hb_007803_040 0.112494571 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
18 Hb_004055_160 0.1125232436 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
19 Hb_000029_330 0.1148762967 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
20 Hb_000679_080 0.116615686 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_220 Hb_000193_220 Hb_010721_020 Hb_010721_020 Hb_000193_220--Hb_010721_020 Hb_002811_250 Hb_002811_250 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_010721_020--Hb_002811_250 Hb_010721_020--Hb_000118_090 Hb_010721_020--Hb_007982_040 Hb_000045_050 Hb_000045_050 Hb_010721_020--Hb_000045_050 Hb_000317_180 Hb_000317_180 Hb_010721_020--Hb_000317_180 Hb_010557_010 Hb_010557_010 Hb_002811_250--Hb_010557_010 Hb_002811_250--Hb_000803_170 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_000803_170--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000803_170--Hb_005563_040 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_001579_280 Hb_001579_280 Hb_000803_170--Hb_001579_280 Hb_007982_040--Hb_005181_120 Hb_007982_040--Hb_010098_040 Hb_009692_040 Hb_009692_040 Hb_007982_040--Hb_009692_040 Hb_000516_080 Hb_000516_080 Hb_007982_040--Hb_000516_080 Hb_011649_010 Hb_011649_010 Hb_000118_090--Hb_011649_010 Hb_000118_090--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000118_090--Hb_071079_020 Hb_000544_080 Hb_000544_080 Hb_000118_090--Hb_000544_080 Hb_000975_050 Hb_000975_050 Hb_000966_040--Hb_000975_050 Hb_004712_200 Hb_004712_200 Hb_000966_040--Hb_004712_200 Hb_000966_040--Hb_010098_040 Hb_004109_130 Hb_004109_130 Hb_000966_040--Hb_004109_130 Hb_000208_270 Hb_000208_270 Hb_000966_040--Hb_000208_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8341 29.2986 169.756 76.5287 18.6025 17.4894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6536 11.8164 9.79781 28.8051 340.58

CAGE analysis