Hb_000193_230

Information

Type -
Description -
Location Contig193: 194525-198980
Sequence    

Annotation

kegg
ID rcu:RCOM_1471270
description RING-H2 finger protein ATL1Q, putative
nr
ID XP_012080300.1
description PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
swissprot
ID Q8LBA0
description NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24 PE=1 SV=2
trembl
ID A0A067KHI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11655 PE=4 SV=1
Gene Ontology
ID GO:0016021
description nep1-interacting 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19252: 194547-197568
cDNA
(Sanger)
(ID:Location)		 020_K10.ab1: 194835-197568 , 041_D08.ab1: 195147-196940

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_230 0.0 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
2 Hb_000078_030 0.0671001644 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002298_040 0.0775632749 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
4 Hb_006787_040 0.083716671 - - polyadenylate-binding protein, putative [Ricinus communis]
5 Hb_115919_020 0.0888979803 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
6 Hb_012305_060 0.0910560512 - - protein translocase, putative [Ricinus communis]
7 Hb_000284_010 0.0958289978 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_001102_010 0.097991862 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
9 Hb_007451_030 0.0982673621 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
10 Hb_000787_070 0.0991547277 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
11 Hb_001191_100 0.1032839699 - - F-actin capping protein beta subunit [Populus trichocarpa]
12 Hb_005016_130 0.1049144581 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
13 Hb_116349_150 0.1059716414 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
14 Hb_008408_030 0.108418699 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
15 Hb_000933_140 0.1086525464 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
16 Hb_009026_050 0.1086544105 - - vacuolar ATPase F subunit [Hevea brasiliensis]
17 Hb_025087_010 0.1089773487 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
18 Hb_001366_230 0.1106673509 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008695_190 0.1135152431 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
20 Hb_183963_020 0.113545195 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_230 Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_000193_230--Hb_000078_030 Hb_002298_040 Hb_002298_040 Hb_000193_230--Hb_002298_040 Hb_006787_040 Hb_006787_040 Hb_000193_230--Hb_006787_040 Hb_115919_020 Hb_115919_020 Hb_000193_230--Hb_115919_020 Hb_012305_060 Hb_012305_060 Hb_000193_230--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_000193_230--Hb_000284_010 Hb_000078_030--Hb_000284_010 Hb_005016_130 Hb_005016_130 Hb_000078_030--Hb_005016_130 Hb_000078_030--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_000078_030--Hb_002298_040 Hb_002298_040--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080 Hb_002298_040--Hb_000284_010 Hb_000849_040 Hb_000849_040 Hb_006787_040--Hb_000849_040 Hb_000442_030 Hb_000442_030 Hb_006787_040--Hb_000442_030 Hb_000387_080 Hb_000387_080 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_115919_020--Hb_000284_010 Hb_115919_020--Hb_005016_130 Hb_000787_070 Hb_000787_070 Hb_115919_020--Hb_000787_070 Hb_115919_020--Hb_002298_040 Hb_004545_160 Hb_004545_160 Hb_012305_060--Hb_004545_160 Hb_007625_020 Hb_007625_020 Hb_012305_060--Hb_007625_020 Hb_012305_060--Hb_000078_030 Hb_012305_060--Hb_000284_010 Hb_007451_030 Hb_007451_030 Hb_012305_060--Hb_007451_030 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
649.75 53.5979 23.9106 14.3232 488.794 610.064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
770.834 655.924 479.926 65.7857 11.4428

CAGE analysis