Hb_000193_250

Information

Type -
Description -
Location Contig193: 217188-219164
Sequence    

Annotation

kegg
ID vvi:100853899
description pentatricopeptide repeat-containing protein At5g61400
nr
ID XP_012080302.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
swissprot
ID Q9FLJ4
description Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
trembl
ID A0A067K4Z7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11657 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19256: 219929-220288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_250 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
2 Hb_152439_020 0.1039060376 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
3 Hb_004306_060 0.110129688 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
4 Hb_001856_020 0.1194682229 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
5 Hb_004800_160 0.1213006905 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
6 Hb_000427_030 0.1215052089 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000179_210 0.1293931477 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
8 Hb_011174_070 0.1310737753 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
9 Hb_006501_040 0.1315249045 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
10 Hb_000059_220 0.1318950909 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
11 Hb_000056_100 0.1342769001 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
12 Hb_000622_310 0.1347970498 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
13 Hb_000025_480 0.1355732095 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
14 Hb_183612_100 0.1356652434 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
15 Hb_002498_060 0.1360000864 - - ATP binding protein, putative [Ricinus communis]
16 Hb_143629_090 0.1364412025 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
17 Hb_098993_010 0.1374672893 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
18 Hb_000576_040 0.1378665658 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
19 Hb_002903_070 0.139425744 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
20 Hb_000157_010 0.1415300461 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_250 Hb_000193_250 Hb_152439_020 Hb_152439_020 Hb_000193_250--Hb_152439_020 Hb_004306_060 Hb_004306_060 Hb_000193_250--Hb_004306_060 Hb_001856_020 Hb_001856_020 Hb_000193_250--Hb_001856_020 Hb_004800_160 Hb_004800_160 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000179_210 Hb_000179_210 Hb_000193_250--Hb_000179_210 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_000479_130 Hb_000479_130 Hb_004306_060--Hb_000479_130 Hb_000934_270 Hb_000934_270 Hb_004306_060--Hb_000934_270 Hb_000236_140 Hb_000236_140 Hb_004306_060--Hb_000236_140 Hb_004306_060--Hb_002498_060 Hb_000059_220 Hb_000059_220 Hb_004306_060--Hb_000059_220 Hb_000179_050 Hb_000179_050 Hb_001856_020--Hb_000179_050 Hb_000056_100 Hb_000056_100 Hb_001856_020--Hb_000056_100 Hb_000124_020 Hb_000124_020 Hb_001856_020--Hb_000124_020 Hb_001856_020--Hb_000157_010 Hb_001123_230 Hb_001123_230 Hb_001856_020--Hb_001123_230 Hb_000861_040 Hb_000861_040 Hb_004800_160--Hb_000861_040 Hb_005357_150 Hb_005357_150 Hb_004800_160--Hb_005357_150 Hb_000025_480 Hb_000025_480 Hb_004800_160--Hb_000025_480 Hb_010402_010 Hb_010402_010 Hb_004800_160--Hb_010402_010 Hb_004800_160--Hb_000427_030 Hb_001981_090 Hb_001981_090 Hb_004800_160--Hb_001981_090 Hb_011174_070 Hb_011174_070 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_000427_030--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_000427_030--Hb_003057_120 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_178968_110 Hb_178968_110 Hb_000179_210--Hb_178968_110 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000179_210--Hb_000059_220 Hb_000457_150 Hb_000457_150 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1213 1.7648 0.384087 0.64448 7.04954 4.15933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26898 5.77377 12.6163 1.88222 0.645994

CAGE analysis