Hb_000193_260

Information

Type -
Description -
Location Contig193: 222718-226456
Sequence    

Annotation

kegg
ID rcu:RCOM_1471250
description exonuclease, putative
nr
ID XP_012080305.1
description PREDICTED: protein NEN1 [Jatropha curcas]
swissprot
ID Q0V842
description Protein NEN2 OS=Arabidopsis thaliana GN=NEN2 PE=2 SV=1
trembl
ID A0A067K5A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11658 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein nen1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19257: 222820-224926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_260 0.0 - - PREDICTED: protein NEN1 [Jatropha curcas]
2 Hb_002534_130 0.0876113371 - - membrane associated ring finger 1,8, putative [Ricinus communis]
3 Hb_061256_010 0.0954672178 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
4 Hb_026198_010 0.096616344 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
5 Hb_000009_520 0.0980490549 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
6 Hb_002693_030 0.0997430451 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
7 Hb_001147_050 0.1009699385 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
8 Hb_006637_030 0.1043856214 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
9 Hb_001269_620 0.1044230829 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
10 Hb_000120_890 0.1047374149 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
11 Hb_002232_430 0.1076871262 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
12 Hb_053709_050 0.1081854986 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_006438_020 0.1101245854 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
14 Hb_004218_010 0.1113136648 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_000465_050 0.1141545643 - - PREDICTED: DNA mismatch repair protein MSH4 [Jatropha curcas]
16 Hb_005946_150 0.1159304588 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
17 Hb_005214_170 0.116573093 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
18 Hb_003687_120 0.1166840826 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
19 Hb_002686_150 0.1170618006 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_021576_150 0.1175506923 - - PREDICTED: formin-like protein 18 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_260 Hb_000193_260 Hb_002534_130 Hb_002534_130 Hb_000193_260--Hb_002534_130 Hb_061256_010 Hb_061256_010 Hb_000193_260--Hb_061256_010 Hb_026198_010 Hb_026198_010 Hb_000193_260--Hb_026198_010 Hb_000009_520 Hb_000009_520 Hb_000193_260--Hb_000009_520 Hb_002693_030 Hb_002693_030 Hb_000193_260--Hb_002693_030 Hb_001147_050 Hb_001147_050 Hb_000193_260--Hb_001147_050 Hb_002534_130--Hb_002693_030 Hb_005686_130 Hb_005686_130 Hb_002534_130--Hb_005686_130 Hb_001269_620 Hb_001269_620 Hb_002534_130--Hb_001269_620 Hb_015778_040 Hb_015778_040 Hb_002534_130--Hb_015778_040 Hb_001277_050 Hb_001277_050 Hb_002534_130--Hb_001277_050 Hb_006438_020 Hb_006438_020 Hb_061256_010--Hb_006438_020 Hb_000235_070 Hb_000235_070 Hb_061256_010--Hb_000235_070 Hb_001799_160 Hb_001799_160 Hb_061256_010--Hb_001799_160 Hb_001729_020 Hb_001729_020 Hb_061256_010--Hb_001729_020 Hb_021576_150 Hb_021576_150 Hb_061256_010--Hb_021576_150 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_002686_150 Hb_002686_150 Hb_000009_520--Hb_002686_150 Hb_000009_520--Hb_026198_010 Hb_005946_150 Hb_005946_150 Hb_000009_520--Hb_005946_150 Hb_002235_390 Hb_002235_390 Hb_000009_520--Hb_002235_390 Hb_002203_030 Hb_002203_030 Hb_000009_520--Hb_002203_030 Hb_002693_030--Hb_006637_030 Hb_007850_030 Hb_007850_030 Hb_002693_030--Hb_007850_030 Hb_000330_090 Hb_000330_090 Hb_002693_030--Hb_000330_090 Hb_053709_050 Hb_053709_050 Hb_002693_030--Hb_053709_050 Hb_001147_050--Hb_001269_620 Hb_001147_050--Hb_000330_090 Hb_001147_050--Hb_002693_030 Hb_002232_430 Hb_002232_430 Hb_001147_050--Hb_002232_430 Hb_001147_050--Hb_001277_050 Hb_001147_050--Hb_006637_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348648 1.68655 3.05394 1.72309 0.396854 0.672499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997802 1.16804 1.30472 1.58562 1.25188

CAGE analysis