Hb_000193_270

Information

Type transcription factor
Description TF Family: Pseudo ARR-B
Location Contig193: 228157-234080
Sequence    

Annotation

kegg
ID rcu:RCOM_1471230
description sensory transduction histidine kinase, putative
nr
ID XP_012080306.1
description PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
swissprot
ID Q9LKL2
description Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1
trembl
ID A0A067K8G3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11659 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like aprr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19258: 228245-232292 , PASA_asmbl_19259: 228245-232292 , PASA_asmbl_19260: 233857-234009 , PASA_asmbl_19261: 234155-234352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_270 0.0 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
2 Hb_000599_300 0.085313472 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
3 Hb_153533_010 0.0868154023 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
4 Hb_005078_010 0.0989938858 - - Derlin-2, putative [Ricinus communis]
5 Hb_009117_030 0.1027974256 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
6 Hb_003633_030 0.1030828272 - - f-actin capping protein alpha, putative [Ricinus communis]
7 Hb_011021_020 0.1038282102 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
8 Hb_025194_100 0.1038521019 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
9 Hb_001579_270 0.1040250209 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
10 Hb_018292_010 0.1045499397 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
11 Hb_005016_050 0.1049997797 - - -
12 Hb_007672_060 0.1055620894 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
13 Hb_000038_080 0.1063677233 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
14 Hb_105123_010 0.1087005382 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
15 Hb_003912_090 0.110176522 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
16 Hb_008406_190 0.1110998332 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
17 Hb_022833_100 0.1119967458 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
18 Hb_003333_060 0.1121711258 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
19 Hb_000181_130 0.1129480621 - - ATP binding protein, putative [Ricinus communis]
20 Hb_020665_040 0.1129827059 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]

Gene co-expression network

sample Hb_000193_270 Hb_000193_270 Hb_000599_300 Hb_000599_300 Hb_000193_270--Hb_000599_300 Hb_153533_010 Hb_153533_010 Hb_000193_270--Hb_153533_010 Hb_005078_010 Hb_005078_010 Hb_000193_270--Hb_005078_010 Hb_009117_030 Hb_009117_030 Hb_000193_270--Hb_009117_030 Hb_003633_030 Hb_003633_030 Hb_000193_270--Hb_003633_030 Hb_011021_020 Hb_011021_020 Hb_000193_270--Hb_011021_020 Hb_002893_080 Hb_002893_080 Hb_000599_300--Hb_002893_080 Hb_000599_300--Hb_003633_030 Hb_007672_060 Hb_007672_060 Hb_000599_300--Hb_007672_060 Hb_001579_270 Hb_001579_270 Hb_000599_300--Hb_001579_270 Hb_002473_130 Hb_002473_130 Hb_000599_300--Hb_002473_130 Hb_000054_090 Hb_000054_090 Hb_000599_300--Hb_000054_090 Hb_004994_380 Hb_004994_380 Hb_153533_010--Hb_004994_380 Hb_001951_180 Hb_001951_180 Hb_153533_010--Hb_001951_180 Hb_003663_060 Hb_003663_060 Hb_153533_010--Hb_003663_060 Hb_035755_010 Hb_035755_010 Hb_153533_010--Hb_035755_010 Hb_004218_280 Hb_004218_280 Hb_153533_010--Hb_004218_280 Hb_012194_050 Hb_012194_050 Hb_005078_010--Hb_012194_050 Hb_152202_010 Hb_152202_010 Hb_005078_010--Hb_152202_010 Hb_004060_020 Hb_004060_020 Hb_005078_010--Hb_004060_020 Hb_005078_010--Hb_004994_380 Hb_000074_080 Hb_000074_080 Hb_005078_010--Hb_000074_080 Hb_005016_050 Hb_005016_050 Hb_009117_030--Hb_005016_050 Hb_001266_080 Hb_001266_080 Hb_009117_030--Hb_001266_080 Hb_000889_020 Hb_000889_020 Hb_009117_030--Hb_000889_020 Hb_003333_060 Hb_003333_060 Hb_009117_030--Hb_003333_060 Hb_032458_010 Hb_032458_010 Hb_009117_030--Hb_032458_010 Hb_000166_110 Hb_000166_110 Hb_009117_030--Hb_000166_110 Hb_033594_120 Hb_033594_120 Hb_003633_030--Hb_033594_120 Hb_007017_030 Hb_007017_030 Hb_003633_030--Hb_007017_030 Hb_003633_030--Hb_002893_080 Hb_000421_220 Hb_000421_220 Hb_003633_030--Hb_000421_220 Hb_001279_150 Hb_001279_150 Hb_003633_030--Hb_001279_150 Hb_002496_020 Hb_002496_020 Hb_011021_020--Hb_002496_020 Hb_005847_060 Hb_005847_060 Hb_011021_020--Hb_005847_060 Hb_000959_030 Hb_000959_030 Hb_011021_020--Hb_000959_030 Hb_004191_020 Hb_004191_020 Hb_011021_020--Hb_004191_020 Hb_000224_160 Hb_000224_160 Hb_011021_020--Hb_000224_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.29117 2.90076 4.05553 7.19613 6.39766 14.2193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5988 7.545 5.10653 6.56024 9.77773

CAGE analysis