Hb_000193_280

Information

Type -
Description -
Location Contig193: 236207-240101
Sequence    

Annotation

kegg
ID rcu:RCOM_1471210
description vesicle transport V-snare protein vti1a, putative
nr
ID XP_002514723.1
description vesicle transport V-snare protein vti1a, putative [Ricinus communis]
swissprot
ID Q9LVP9
description Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1
trembl
ID B9RLV4
description Vesicle transport V-snare protein vti1a, putative OS=Ricinus communis GN=RCOM_1471210 PE=4 SV=1
Gene Ontology
ID GO:0005794
description vesicle transport v-snare 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19262: 235939-236680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_280 0.0 - - vesicle transport V-snare protein vti1a, putative [Ricinus communis]
2 Hb_019654_050 0.151359707 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
3 Hb_002897_070 0.1617693517 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
4 Hb_001369_470 0.1658254223 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
5 Hb_000369_010 0.1661776024 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003271_040 0.1687209028 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
7 Hb_004567_010 0.1715299791 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
8 Hb_000668_060 0.17661871 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
9 Hb_000640_050 0.1767503304 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
10 Hb_000703_160 0.1772071469 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
11 Hb_000617_310 0.1808542708 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
12 Hb_011381_040 0.1833716159 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
13 Hb_000282_050 0.1836175143 - - calcineurin B, putative [Ricinus communis]
14 Hb_005144_210 0.185502203 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003835_110 0.1861098991 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
16 Hb_011671_340 0.1867226898 - - small GTPase [Hevea brasiliensis]
17 Hb_000389_110 0.1874372925 - - adenosine kinase, putative [Ricinus communis]
18 Hb_000035_080 0.1879369062 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
19 Hb_001863_160 0.1892943165 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
20 Hb_008725_060 0.1902077714 - - Protein COBRA precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000193_280 Hb_000193_280 Hb_019654_050 Hb_019654_050 Hb_000193_280--Hb_019654_050 Hb_002897_070 Hb_002897_070 Hb_000193_280--Hb_002897_070 Hb_001369_470 Hb_001369_470 Hb_000193_280--Hb_001369_470 Hb_000369_010 Hb_000369_010 Hb_000193_280--Hb_000369_010 Hb_003271_040 Hb_003271_040 Hb_000193_280--Hb_003271_040 Hb_004567_010 Hb_004567_010 Hb_000193_280--Hb_004567_010 Hb_001799_160 Hb_001799_160 Hb_019654_050--Hb_001799_160 Hb_000120_890 Hb_000120_890 Hb_019654_050--Hb_000120_890 Hb_003835_110 Hb_003835_110 Hb_019654_050--Hb_003835_110 Hb_003498_100 Hb_003498_100 Hb_019654_050--Hb_003498_100 Hb_011381_040 Hb_011381_040 Hb_019654_050--Hb_011381_040 Hb_002783_220 Hb_002783_220 Hb_019654_050--Hb_002783_220 Hb_000803_180 Hb_000803_180 Hb_002897_070--Hb_000803_180 Hb_001322_020 Hb_001322_020 Hb_002897_070--Hb_001322_020 Hb_000617_310 Hb_000617_310 Hb_002897_070--Hb_000617_310 Hb_001863_140 Hb_001863_140 Hb_002897_070--Hb_001863_140 Hb_004223_110 Hb_004223_110 Hb_002897_070--Hb_004223_110 Hb_000959_220 Hb_000959_220 Hb_002897_070--Hb_000959_220 Hb_005144_210 Hb_005144_210 Hb_001369_470--Hb_005144_210 Hb_004108_210 Hb_004108_210 Hb_001369_470--Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_001369_470--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_001369_470--Hb_001221_580 Hb_161568_010 Hb_161568_010 Hb_001369_470--Hb_161568_010 Hb_005903_020 Hb_005903_020 Hb_001369_470--Hb_005903_020 Hb_000340_130 Hb_000340_130 Hb_000369_010--Hb_000340_130 Hb_010080_010 Hb_010080_010 Hb_000369_010--Hb_010080_010 Hb_002284_210 Hb_002284_210 Hb_000369_010--Hb_002284_210 Hb_001277_280 Hb_001277_280 Hb_000369_010--Hb_001277_280 Hb_023765_020 Hb_023765_020 Hb_000369_010--Hb_023765_020 Hb_000369_010--Hb_000959_220 Hb_013405_070 Hb_013405_070 Hb_003271_040--Hb_013405_070 Hb_011671_340 Hb_011671_340 Hb_003271_040--Hb_011671_340 Hb_000800_020 Hb_000800_020 Hb_003271_040--Hb_000800_020 Hb_003271_040--Hb_003835_110 Hb_002205_140 Hb_002205_140 Hb_003271_040--Hb_002205_140 Hb_003271_040--Hb_019654_050 Hb_002740_080 Hb_002740_080 Hb_004567_010--Hb_002740_080 Hb_003540_050 Hb_003540_050 Hb_004567_010--Hb_003540_050 Hb_000152_600 Hb_000152_600 Hb_004567_010--Hb_000152_600 Hb_005535_080 Hb_005535_080 Hb_004567_010--Hb_005535_080 Hb_000072_300 Hb_000072_300 Hb_004567_010--Hb_000072_300 Hb_000753_160 Hb_000753_160 Hb_004567_010--Hb_000753_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269637 0.898373 3.90564 2.35839 1.40914 0.264383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.386835 1.27731 0.653528 0.64256 0.483065

CAGE analysis