Hb_000193_290

Information

Type -
Description -
Location Contig193: 240877-242274
Sequence    

Annotation

kegg
ID rcu:RCOM_1471200
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP31285.1
description hypothetical protein JCGZ_11661 [Jatropha curcas]
swissprot
ID Q9FLJ6
description Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana GN=At5g61370 PE=2 SV=1
trembl
ID A0A067KGB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11661 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_290 0.0 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
2 Hb_008453_090 0.0661571546 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
3 Hb_006949_040 0.067861168 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_000671_150 0.0770257049 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
5 Hb_055062_030 0.078948707 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
6 Hb_003266_130 0.0826543423 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
7 Hb_016065_010 0.0831142087 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
8 Hb_004324_370 0.0854129385 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
9 Hb_000503_050 0.0858158965 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
10 Hb_000457_150 0.0863754149 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_007747_200 0.0865542494 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
12 Hb_002056_060 0.0869794426 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
13 Hb_006922_110 0.0878261552 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
14 Hb_006949_050 0.0893697605 - - unknown [Lotus japonicus]
15 Hb_005488_010 0.091483624 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006846_110 0.0920791852 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
17 Hb_005289_030 0.0930318246 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
18 Hb_003018_190 0.0930737956 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
19 Hb_008289_060 0.0944824503 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
20 Hb_004951_040 0.0950342306 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]

Gene co-expression network

sample Hb_000193_290 Hb_000193_290 Hb_008453_090 Hb_008453_090 Hb_000193_290--Hb_008453_090 Hb_006949_040 Hb_006949_040 Hb_000193_290--Hb_006949_040 Hb_000671_150 Hb_000671_150 Hb_000193_290--Hb_000671_150 Hb_055062_030 Hb_055062_030 Hb_000193_290--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_000193_290--Hb_003266_130 Hb_016065_010 Hb_016065_010 Hb_000193_290--Hb_016065_010 Hb_004951_040 Hb_004951_040 Hb_008453_090--Hb_004951_040 Hb_008453_090--Hb_016065_010 Hb_008453_090--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_008453_090--Hb_003018_200 Hb_005333_130 Hb_005333_130 Hb_008453_090--Hb_005333_130 Hb_006949_050 Hb_006949_050 Hb_006949_040--Hb_006949_050 Hb_061802_020 Hb_061802_020 Hb_006949_040--Hb_061802_020 Hb_000554_020 Hb_000554_020 Hb_006949_040--Hb_000554_020 Hb_000030_150 Hb_000030_150 Hb_006949_040--Hb_000030_150 Hb_001671_020 Hb_001671_020 Hb_006949_040--Hb_001671_020 Hb_001881_020 Hb_001881_020 Hb_000671_150--Hb_001881_020 Hb_000205_270 Hb_000205_270 Hb_000671_150--Hb_000205_270 Hb_001109_020 Hb_001109_020 Hb_000671_150--Hb_001109_020 Hb_008289_060 Hb_008289_060 Hb_000671_150--Hb_008289_060 Hb_003018_190 Hb_003018_190 Hb_000671_150--Hb_003018_190 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_055062_030--Hb_001671_020 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_003266_130--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_003266_130--Hb_000614_230 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_010172_050 Hb_010172_050 Hb_003266_130--Hb_010172_050 Hb_016065_010--Hb_000205_270 Hb_016065_010--Hb_005488_010 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81957 1.20061 0.377538 0.651378 1.03727 2.05993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96512 3.22518 2.94628 0.937214 0.555908

CAGE analysis