Hb_000193_300

Information

Type -
Description -
Location Contig193: 248057-249412
Sequence    

Annotation

kegg
ID rcu:RCOM_1471180
description Xyloglucan 6-xylosyltransferase, putative (EC:2.4.2.39)
nr
ID XP_012080311.1
description PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
swissprot
ID Q9LF80
description Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1
trembl
ID B9RLV1
description Xyloglucan 6-xylosyltransferase, putative OS=Ricinus communis GN=RCOM_1471180 PE=4 SV=1
Gene Ontology
ID GO:0016021
description glycosyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19264: 247884-249764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_300 0.0 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
2 Hb_026740_020 0.0745132877 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000413_020 0.1015437476 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
4 Hb_001946_180 0.1017497468 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005977_100 0.1054337458 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
6 Hb_001347_050 0.1062136174 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_000085_260 0.1066486026 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
8 Hb_000035_220 0.1068045226 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
9 Hb_005192_010 0.1092720772 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
10 Hb_000265_140 0.1105887933 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
11 Hb_000890_230 0.1128131395 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
12 Hb_183086_030 0.1135007329 - - GTPase-activating protein GYP7 [Gossypium arboreum]
13 Hb_007286_020 0.1148587561 - - hypothetical protein L484_010675 [Morus notabilis]
14 Hb_000679_100 0.115252917 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
15 Hb_005062_110 0.1153798277 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
16 Hb_003209_130 0.1158756632 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_001754_020 0.1160966147 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
18 Hb_000503_020 0.1165395608 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
19 Hb_033642_060 0.1194699155 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
20 Hb_008014_040 0.1206617267 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_300 Hb_000193_300 Hb_026740_020 Hb_026740_020 Hb_000193_300--Hb_026740_020 Hb_000413_020 Hb_000413_020 Hb_000193_300--Hb_000413_020 Hb_001946_180 Hb_001946_180 Hb_000193_300--Hb_001946_180 Hb_005977_100 Hb_005977_100 Hb_000193_300--Hb_005977_100 Hb_001347_050 Hb_001347_050 Hb_000193_300--Hb_001347_050 Hb_000085_260 Hb_000085_260 Hb_000193_300--Hb_000085_260 Hb_026740_020--Hb_000413_020 Hb_000138_060 Hb_000138_060 Hb_026740_020--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_026740_020--Hb_002289_150 Hb_005192_010 Hb_005192_010 Hb_026740_020--Hb_005192_010 Hb_000265_140 Hb_000265_140 Hb_026740_020--Hb_000265_140 Hb_000413_020--Hb_005192_010 Hb_003975_010 Hb_003975_010 Hb_000413_020--Hb_003975_010 Hb_000413_020--Hb_001946_180 Hb_009252_030 Hb_009252_030 Hb_000413_020--Hb_009252_030 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001842_010 Hb_001842_010 Hb_001946_180--Hb_001842_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_005977_100--Hb_000049_020 Hb_007545_010 Hb_007545_010 Hb_005977_100--Hb_007545_010 Hb_011310_110 Hb_011310_110 Hb_005977_100--Hb_011310_110 Hb_000212_420 Hb_000212_420 Hb_005977_100--Hb_000212_420 Hb_003209_130 Hb_003209_130 Hb_005977_100--Hb_003209_130 Hb_004102_170 Hb_004102_170 Hb_005977_100--Hb_004102_170 Hb_000679_100 Hb_000679_100 Hb_001347_050--Hb_000679_100 Hb_000258_040 Hb_000258_040 Hb_001347_050--Hb_000258_040 Hb_001347_050--Hb_003209_130 Hb_001347_050--Hb_000138_060 Hb_001347_050--Hb_000085_260 Hb_001159_030 Hb_001159_030 Hb_000085_260--Hb_001159_030 Hb_010042_030 Hb_010042_030 Hb_000085_260--Hb_010042_030 Hb_005062_110 Hb_005062_110 Hb_000085_260--Hb_005062_110 Hb_000098_050 Hb_000098_050 Hb_000085_260--Hb_000098_050 Hb_000503_020 Hb_000503_020 Hb_000085_260--Hb_000503_020 Hb_000085_260--Hb_000679_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7527 14.7123 11.1783 37.6395 6.91364 10.8278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66954 4.97157 8.01013 8.64518 16.3939

CAGE analysis