Hb_000193_310

Information

Type -
Description -
Location Contig193: 255876-258263
Sequence    

Annotation

kegg
ID vvi:100266109
description pentatricopeptide repeat-containing protein At5g44230
nr
ID XP_012080313.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
swissprot
ID Q9FFG8
description Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
trembl
ID A0A067KGB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11666 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19265: 257727-257895 , PASA_asmbl_19266: 257970-258351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_310 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
2 Hb_012799_030 0.076321049 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
3 Hb_000318_390 0.0891314408 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
4 Hb_012656_030 0.0892293663 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
5 Hb_001439_140 0.0904288436 - - pattern formation protein, putative [Ricinus communis]
6 Hb_006711_100 0.0943622807 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
7 Hb_000707_050 0.0988080556 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
8 Hb_005181_110 0.1036146067 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
9 Hb_000244_160 0.1050048506 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
10 Hb_003440_050 0.1065277067 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
11 Hb_000803_260 0.1075191947 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
12 Hb_009486_200 0.1093520327 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
13 Hb_007416_160 0.1114627846 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
14 Hb_004143_130 0.1142190719 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
15 Hb_003938_080 0.1157037886 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
16 Hb_011242_040 0.115747148 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_001584_150 0.1167246831 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
18 Hb_008500_010 0.1172994109 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
19 Hb_002725_120 0.1176904505 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
20 Hb_002783_260 0.1177865472 - - hypothetical protein JCGZ_08219 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_310 Hb_000193_310 Hb_012799_030 Hb_012799_030 Hb_000193_310--Hb_012799_030 Hb_000318_390 Hb_000318_390 Hb_000193_310--Hb_000318_390 Hb_012656_030 Hb_012656_030 Hb_000193_310--Hb_012656_030 Hb_001439_140 Hb_001439_140 Hb_000193_310--Hb_001439_140 Hb_006711_100 Hb_006711_100 Hb_000193_310--Hb_006711_100 Hb_000707_050 Hb_000707_050 Hb_000193_310--Hb_000707_050 Hb_000034_040 Hb_000034_040 Hb_012799_030--Hb_000034_040 Hb_000201_110 Hb_000201_110 Hb_012799_030--Hb_000201_110 Hb_007416_160 Hb_007416_160 Hb_012799_030--Hb_007416_160 Hb_012799_030--Hb_006711_100 Hb_000803_260 Hb_000803_260 Hb_012799_030--Hb_000803_260 Hb_014267_010 Hb_014267_010 Hb_000318_390--Hb_014267_010 Hb_000318_390--Hb_012656_030 Hb_000890_050 Hb_000890_050 Hb_000318_390--Hb_000890_050 Hb_000318_390--Hb_000803_260 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_003440_050 Hb_003440_050 Hb_000318_390--Hb_003440_050 Hb_008500_010 Hb_008500_010 Hb_012656_030--Hb_008500_010 Hb_012656_030--Hb_014267_010 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_012656_030--Hb_003440_050 Hb_000313_060 Hb_000313_060 Hb_001439_140--Hb_000313_060 Hb_007586_030 Hb_007586_030 Hb_001439_140--Hb_007586_030 Hb_001930_010 Hb_001930_010 Hb_001439_140--Hb_001930_010 Hb_010417_050 Hb_010417_050 Hb_001439_140--Hb_010417_050 Hb_001439_140--Hb_014267_010 Hb_006711_100--Hb_000707_050 Hb_004225_050 Hb_004225_050 Hb_006711_100--Hb_004225_050 Hb_000388_090 Hb_000388_090 Hb_006711_100--Hb_000388_090 Hb_000883_060 Hb_000883_060 Hb_006711_100--Hb_000883_060 Hb_000352_190 Hb_000352_190 Hb_006711_100--Hb_000352_190 Hb_000739_310 Hb_000739_310 Hb_000707_050--Hb_000739_310 Hb_086639_040 Hb_086639_040 Hb_000707_050--Hb_086639_040 Hb_000574_390 Hb_000574_390 Hb_000707_050--Hb_000574_390 Hb_000832_020 Hb_000832_020 Hb_000707_050--Hb_000832_020 Hb_013405_030 Hb_013405_030 Hb_000707_050--Hb_013405_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45437 2.73587 0.664743 1.09726 2.94997 4.65464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68209 2.47381 4.88378 2.4487 4.17496

CAGE analysis