Hb_000193_330

Information

Type -
Description -
Location Contig193: 265663-278934
Sequence    

Annotation

kegg
ID pop:POPTR_0015s072201
description hypothetical protein
nr
ID XP_012080315.1
description PREDICTED: formin-like protein 20 [Jatropha curcas]
swissprot
ID Q9FLQ7
description Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3
trembl
ID A0A067K5A8
description Formin-like protein OS=Jatropha curcas GN=JCGZ_11668 PE=3 SV=1
Gene Ontology
ID GO:0005884
description formin-like protein 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19268: 266179-274639 , PASA_asmbl_19269: 275587-278724 , PASA_asmbl_19270: 275587-276883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_330 0.0 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
2 Hb_000538_280 0.0679690173 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
3 Hb_003040_050 0.068396428 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
4 Hb_000181_340 0.0684102552 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_001163_060 0.0699314699 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_004003_040 0.0700529306 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_007763_070 0.0712007741 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
8 Hb_001005_130 0.0712768114 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
9 Hb_000445_090 0.072947148 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
10 Hb_000212_230 0.0760835591 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
11 Hb_001999_290 0.0764425475 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
12 Hb_000103_340 0.0767782573 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
13 Hb_001377_190 0.0768571834 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
14 Hb_073171_070 0.0772634604 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
15 Hb_009288_020 0.0772903733 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
16 Hb_006913_020 0.0777876223 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
17 Hb_000441_090 0.0782541102 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
18 Hb_002027_080 0.0790875394 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
19 Hb_001279_040 0.0792452348 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
20 Hb_001635_120 0.0793145973 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]

Gene co-expression network

sample Hb_000193_330 Hb_000193_330 Hb_000538_280 Hb_000538_280 Hb_000193_330--Hb_000538_280 Hb_003040_050 Hb_003040_050 Hb_000193_330--Hb_003040_050 Hb_000181_340 Hb_000181_340 Hb_000193_330--Hb_000181_340 Hb_001163_060 Hb_001163_060 Hb_000193_330--Hb_001163_060 Hb_004003_040 Hb_004003_040 Hb_000193_330--Hb_004003_040 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070 Hb_000538_280--Hb_003040_050 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_001005_130 Hb_001005_130 Hb_000538_280--Hb_001005_130 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_012632_010 Hb_012632_010 Hb_000181_340--Hb_012632_010 Hb_062226_070 Hb_062226_070 Hb_000181_340--Hb_062226_070 Hb_004374_110 Hb_004374_110 Hb_000181_340--Hb_004374_110 Hb_000103_340 Hb_000103_340 Hb_000181_340--Hb_000103_340 Hb_001999_290 Hb_001999_290 Hb_000181_340--Hb_001999_290 Hb_000445_090 Hb_000445_090 Hb_001163_060--Hb_000445_090 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_001163_060--Hb_004003_040 Hb_000346_060 Hb_000346_060 Hb_004003_040--Hb_000346_060 Hb_002027_080 Hb_002027_080 Hb_004003_040--Hb_002027_080 Hb_000441_090 Hb_000441_090 Hb_004003_040--Hb_000441_090 Hb_000797_040 Hb_000797_040 Hb_004003_040--Hb_000797_040 Hb_000731_010 Hb_000731_010 Hb_004003_040--Hb_000731_010 Hb_001712_060 Hb_001712_060 Hb_007763_070--Hb_001712_060 Hb_006775_130 Hb_006775_130 Hb_007763_070--Hb_006775_130 Hb_000465_280 Hb_000465_280 Hb_007763_070--Hb_000465_280 Hb_001789_110 Hb_001789_110 Hb_007763_070--Hb_001789_110 Hb_007763_070--Hb_000538_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.36402 8.57046 7.44353 7.86832 5.37693 6.04339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68837 4.70753 7.08142 5.25172 13.492

CAGE analysis