Hb_000193_350

Information

Type -
Description -
Location Contig193: 298385-299712
Sequence    

Annotation

kegg
ID cic:CICLE_v10009759mg
description hypothetical protein
nr
ID AAQ08196.1
description eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
swissprot
ID Q9AXJ4
description Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2
trembl
ID Q71F46
description Eukaryotic translation initiation factor 5A OS=Hevea brasiliensis GN=eIF-5A PE=2 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 5a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19276: 297547-299731 , PASA_asmbl_19277: 300687-301581
cDNA
(Sanger)
(ID:Location)		 011_J09.ab1: 297860-299628 , 026_L20.ab1: 297963-299653 , 028_A13.ab1: 297949-299703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_350 0.0 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
2 Hb_000175_400 0.0739128584 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003687_020 0.0840924133 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
4 Hb_005224_050 0.0875896092 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
5 Hb_000189_530 0.0886552014 - - 40S ribosomal protein S24B [Hevea brasiliensis]
6 Hb_017711_010 0.0942908225 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
7 Hb_011016_090 0.0948611183 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
8 Hb_025193_050 0.0958297112 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
9 Hb_002259_150 0.0986389191 - - BnaC04g40780D [Brassica napus]
10 Hb_004117_180 0.1015223985 - - -
11 Hb_102156_010 0.1018644298 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004453_150 0.1024735246 - - BnaC02g13240D [Brassica napus]
13 Hb_001057_050 0.1029046089 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
14 Hb_000684_230 0.1041925934 - - 40S ribosomal protein S23, putative [Ricinus communis]
15 Hb_000032_540 0.1065115495 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
16 Hb_004807_060 0.1071641355 - - -
17 Hb_007317_060 0.1093836112 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
18 Hb_002272_260 0.1102963428 - - -
19 Hb_000771_100 0.1128589238 - - Os06g0527300 [Oryza sativa Japonica Group]
20 Hb_011161_040 0.1149352269 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_350 Hb_000193_350 Hb_000175_400 Hb_000175_400 Hb_000193_350--Hb_000175_400 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090 Hb_002259_030 Hb_002259_030 Hb_000175_400--Hb_002259_030 Hb_004453_150 Hb_004453_150 Hb_000175_400--Hb_004453_150 Hb_025193_050 Hb_025193_050 Hb_000175_400--Hb_025193_050 Hb_000175_400--Hb_011016_090 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_003687_020--Hb_025193_050 Hb_007317_060 Hb_007317_060 Hb_003687_020--Hb_007317_060 Hb_003687_020--Hb_005224_050 Hb_002259_150 Hb_002259_150 Hb_003687_020--Hb_002259_150 Hb_000684_230 Hb_000684_230 Hb_003687_020--Hb_000684_230 Hb_005224_050--Hb_017711_010 Hb_003058_220 Hb_003058_220 Hb_005224_050--Hb_003058_220 Hb_000199_070 Hb_000199_070 Hb_005224_050--Hb_000199_070 Hb_002293_030 Hb_002293_030 Hb_005224_050--Hb_002293_030 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_000189_530--Hb_000617_320 Hb_000366_100 Hb_000366_100 Hb_000189_530--Hb_000366_100 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_007166_050 Hb_007166_050 Hb_000189_530--Hb_007166_050 Hb_017711_010--Hb_002293_030 Hb_017711_010--Hb_000175_400 Hb_017711_010--Hb_003058_220 Hb_000009_040 Hb_000009_040 Hb_017711_010--Hb_000009_040 Hb_011016_090--Hb_000189_530 Hb_011016_090--Hb_002259_030 Hb_011016_090--Hb_004453_150 Hb_000032_540 Hb_000032_540 Hb_011016_090--Hb_000032_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
305.565 81.244 59.4223 205.916 337.69 1004.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
620.401 882.232 278.302 144.45 33.3758

CAGE analysis