Hb_000193_360

Information

Type -
Description -
Location Contig193: 300175-301602
Sequence    

Annotation

kegg
ID rcu:RCOM_1470990
description hypothetical protein
nr
ID XP_012080322.1
description PREDICTED: uncharacterized protein At5g01610-like [Jatropha curcas]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID A0A067K5B2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11673 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19277: 300687-301581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_360 0.0 - - PREDICTED: uncharacterized protein At5g01610-like [Jatropha curcas]
2 Hb_003151_020 0.0710158742 - - Ankyrin repeat family protein, putative [Theobroma cacao]
3 Hb_006483_040 0.0959859261 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
4 Hb_001232_070 0.0960656492 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_120 0.0972337987 - - 21 kDa protein precursor, putative [Ricinus communis]
6 Hb_002391_340 0.0994973487 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
7 Hb_154038_010 0.0997805375 - - cytochrome P450, putative [Ricinus communis]
8 Hb_001472_150 0.1013724747 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
9 Hb_005839_040 0.104237051 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
10 Hb_008195_090 0.1061882011 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008453_050 0.1063423198 - - PREDICTED: peroxidase 64 [Jatropha curcas]
12 Hb_064445_020 0.1075602153 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
13 Hb_072771_010 0.1083949722 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
14 Hb_001345_050 0.1086086507 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
15 Hb_002073_130 0.1098231033 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
16 Hb_000803_080 0.1101757166 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_085682_010 0.1130005421 - - -
18 Hb_004807_010 0.1130710292 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
19 Hb_002326_010 0.1143895515 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
20 Hb_001593_040 0.114718508 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000193_360 Hb_000193_360 Hb_003151_020 Hb_003151_020 Hb_000193_360--Hb_003151_020 Hb_006483_040 Hb_006483_040 Hb_000193_360--Hb_006483_040 Hb_001232_070 Hb_001232_070 Hb_000193_360--Hb_001232_070 Hb_000329_120 Hb_000329_120 Hb_000193_360--Hb_000329_120 Hb_002391_340 Hb_002391_340 Hb_000193_360--Hb_002391_340 Hb_154038_010 Hb_154038_010 Hb_000193_360--Hb_154038_010 Hb_003151_020--Hb_001232_070 Hb_003151_020--Hb_002391_340 Hb_001472_150 Hb_001472_150 Hb_003151_020--Hb_001472_150 Hb_008195_090 Hb_008195_090 Hb_003151_020--Hb_008195_090 Hb_003151_020--Hb_006483_040 Hb_003151_020--Hb_000329_120 Hb_006483_040--Hb_154038_010 Hb_064445_020 Hb_064445_020 Hb_006483_040--Hb_064445_020 Hb_008453_050 Hb_008453_050 Hb_006483_040--Hb_008453_050 Hb_006483_040--Hb_001232_070 Hb_006483_040--Hb_001472_150 Hb_006483_040--Hb_002391_340 Hb_001232_070--Hb_002391_340 Hb_001232_070--Hb_000329_120 Hb_001232_070--Hb_001472_150 Hb_065774_010 Hb_065774_010 Hb_001232_070--Hb_065774_010 Hb_001437_170 Hb_001437_170 Hb_001232_070--Hb_001437_170 Hb_085682_010 Hb_085682_010 Hb_000329_120--Hb_085682_010 Hb_000329_120--Hb_002391_340 Hb_000329_120--Hb_006483_040 Hb_004807_010 Hb_004807_010 Hb_000329_120--Hb_004807_010 Hb_005839_040 Hb_005839_040 Hb_000329_120--Hb_005839_040 Hb_002391_340--Hb_065774_010 Hb_002391_340--Hb_001437_170 Hb_002391_340--Hb_001472_150 Hb_096907_010 Hb_096907_010 Hb_002391_340--Hb_096907_010 Hb_154038_010--Hb_008453_050 Hb_154038_010--Hb_064445_020 Hb_072771_010 Hb_072771_010 Hb_154038_010--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_154038_010--Hb_001345_050 Hb_002326_010 Hb_002326_010 Hb_154038_010--Hb_002326_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.25375 1.85905 0.0830943 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0307991 3.36857

CAGE analysis