Hb_000194_010

Information

Type -
Description -
Location Contig194: 39068-45728
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19920g
description POPTRDRAFT_802185; hypothetical protein
nr
ID NP_001292968.1
description omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
swissprot
ID P48627
description Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1
trembl
ID A7XZU9
description Chloroplast omega-6 fatty acid desaturase OS=Jatropha curcas GN=JCGZ_04023 PE=2 SV=1
Gene Ontology
ID GO:0009941
description omega-6 fatty acid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19361: 39072-45728
cDNA
(Sanger)
(ID:Location)		 028_F17.ab1: 42284-45728 , 037_C14.ab1: 42250-45728

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000194_010 0.0 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
2 Hb_000061_150 0.0875706721 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
3 Hb_001454_150 0.0897770333 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
4 Hb_000181_060 0.0902098654 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
5 Hb_000976_190 0.101975759 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
6 Hb_011310_140 0.1037342978 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
7 Hb_012653_030 0.1071102179 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000284_130 0.111428533 - - sodium-bile acid cotransporter, putative [Ricinus communis]
9 Hb_002044_020 0.1169331286 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
10 Hb_006787_090 0.1199375998 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
11 Hb_002835_160 0.1201936174 - - Kinase superfamily protein [Theobroma cacao]
12 Hb_002986_090 0.1203865903 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_021650_010 0.1219609911 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
14 Hb_004871_010 0.1249405295 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
15 Hb_000802_130 0.1276506328 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
16 Hb_005016_140 0.1280269796 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_005618_080 0.1288515937 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
18 Hb_189003_060 0.1299003675 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_002997_070 0.1309290882 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
20 Hb_000094_100 0.1316869903 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]

Gene co-expression network

sample Hb_000194_010 Hb_000194_010 Hb_000061_150 Hb_000061_150 Hb_000194_010--Hb_000061_150 Hb_001454_150 Hb_001454_150 Hb_000194_010--Hb_001454_150 Hb_000181_060 Hb_000181_060 Hb_000194_010--Hb_000181_060 Hb_000976_190 Hb_000976_190 Hb_000194_010--Hb_000976_190 Hb_011310_140 Hb_011310_140 Hb_000194_010--Hb_011310_140 Hb_012653_030 Hb_012653_030 Hb_000194_010--Hb_012653_030 Hb_007594_040 Hb_007594_040 Hb_000061_150--Hb_007594_040 Hb_002044_020 Hb_002044_020 Hb_000061_150--Hb_002044_020 Hb_005527_010 Hb_005527_010 Hb_000061_150--Hb_005527_010 Hb_006846_070 Hb_006846_070 Hb_000061_150--Hb_006846_070 Hb_000061_150--Hb_001454_150 Hb_001789_160 Hb_001789_160 Hb_001454_150--Hb_001789_160 Hb_005016_140 Hb_005016_140 Hb_001454_150--Hb_005016_140 Hb_031042_060 Hb_031042_060 Hb_001454_150--Hb_031042_060 Hb_000260_710 Hb_000260_710 Hb_001454_150--Hb_000260_710 Hb_004871_010 Hb_004871_010 Hb_001454_150--Hb_004871_010 Hb_004994_080 Hb_004994_080 Hb_000181_060--Hb_004994_080 Hb_000284_130 Hb_000284_130 Hb_000181_060--Hb_000284_130 Hb_007263_010 Hb_007263_010 Hb_000181_060--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000181_060--Hb_002027_320 Hb_001623_490 Hb_001623_490 Hb_000181_060--Hb_001623_490 Hb_000976_190--Hb_011310_140 Hb_000976_190--Hb_004871_010 Hb_006787_090 Hb_006787_090 Hb_000976_190--Hb_006787_090 Hb_011861_050 Hb_011861_050 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170 Hb_003304_030 Hb_003304_030 Hb_011310_140--Hb_003304_030 Hb_011310_140--Hb_006787_090 Hb_002997_070 Hb_002997_070 Hb_011310_140--Hb_002997_070 Hb_021650_010 Hb_021650_010 Hb_011310_140--Hb_021650_010 Hb_005618_080 Hb_005618_080 Hb_012653_030--Hb_005618_080 Hb_012653_030--Hb_002044_020 Hb_001711_060 Hb_001711_060 Hb_012653_030--Hb_001711_060 Hb_000438_130 Hb_000438_130 Hb_012653_030--Hb_000438_130 Hb_000473_050 Hb_000473_050 Hb_012653_030--Hb_000473_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.272 11.9626 108.506 28.8234 13.5264 31.6066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9994 18.4585 17.3029 15.3039 84.6817

CAGE analysis