Hb_000194_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig194: 130597-132146
Sequence    

Annotation

kegg
ID tcc:TCM_017070
description NAC domain protein
nr
ID AGL39715.1
description NAC transcription factor 059 [Jatropha curcas]
swissprot
ID A0SPJ4
description NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=3 SV=1
trembl
ID R4NHS0
description NAC transcription factor 059 OS=Jatropha curcas GN=JCGZ_18752 PE=4 SV=1
Gene Ontology
ID GO:0097659
description nac domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000194_030 0.0 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
2 Hb_159012_010 0.0570757481 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
3 Hb_004926_010 0.0668501805 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
4 Hb_004319_100 0.0680834272 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
5 Hb_007426_100 0.0708124111 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001529_010 0.0764482564 - - -
7 Hb_000480_050 0.0933986605 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
8 Hb_033153_030 0.0951186019 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
9 Hb_007477_020 0.112316665 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
10 Hb_002874_100 0.1132762852 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000445_480 0.1159515689 - - cytochrome P450, putative [Ricinus communis]
12 Hb_003058_090 0.12024316 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
13 Hb_039946_040 0.1212737447 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
14 Hb_002999_010 0.1344690066 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
15 Hb_004031_060 0.1360941876 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
16 Hb_033772_040 0.1363090694 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005373_030 0.1379649322 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000269_050 0.1392944406 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
19 Hb_005348_020 0.1447554186 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000740_140 0.1450224768 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]

Gene co-expression network

sample Hb_000194_030 Hb_000194_030 Hb_159012_010 Hb_159012_010 Hb_000194_030--Hb_159012_010 Hb_004926_010 Hb_004926_010 Hb_000194_030--Hb_004926_010 Hb_004319_100 Hb_004319_100 Hb_000194_030--Hb_004319_100 Hb_007426_100 Hb_007426_100 Hb_000194_030--Hb_007426_100 Hb_001529_010 Hb_001529_010 Hb_000194_030--Hb_001529_010 Hb_000480_050 Hb_000480_050 Hb_000194_030--Hb_000480_050 Hb_159012_010--Hb_004926_010 Hb_159012_010--Hb_000480_050 Hb_159012_010--Hb_004319_100 Hb_159012_010--Hb_001529_010 Hb_007477_020 Hb_007477_020 Hb_159012_010--Hb_007477_020 Hb_004926_010--Hb_000480_050 Hb_004031_060 Hb_004031_060 Hb_004926_010--Hb_004031_060 Hb_002999_010 Hb_002999_010 Hb_004926_010--Hb_002999_010 Hb_004926_010--Hb_007426_100 Hb_033772_040 Hb_033772_040 Hb_004319_100--Hb_033772_040 Hb_004319_100--Hb_007426_100 Hb_004319_100--Hb_001529_010 Hb_034310_020 Hb_034310_020 Hb_004319_100--Hb_034310_020 Hb_002874_100 Hb_002874_100 Hb_007426_100--Hb_002874_100 Hb_033153_030 Hb_033153_030 Hb_007426_100--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_007426_100--Hb_000445_480 Hb_007426_100--Hb_001529_010 Hb_002894_020 Hb_002894_020 Hb_007426_100--Hb_002894_020 Hb_001529_010--Hb_033153_030 Hb_001529_010--Hb_000445_480 Hb_001529_010--Hb_002894_020 Hb_000480_050--Hb_002999_010 Hb_000480_050--Hb_007477_020 Hb_000480_050--Hb_004031_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.208191 0.259265 4.17987 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.433837 0

CAGE analysis