Hb_000195_050

Information

Type -
Description -
Location Contig195: 115956-116159
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000195_050 0.0 - - -
2 Hb_000563_290 0.0342269737 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
3 Hb_038675_010 0.0389833336 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
4 Hb_059069_010 0.0401032941 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
5 Hb_011360_100 0.0567934939 - - -
6 Hb_004458_050 0.0707586764 - - -
7 Hb_005741_010 0.0754936116 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
8 Hb_012194_010 0.0880551427 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_002490_040 0.0997471216 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
10 Hb_004429_040 0.1002101484 - - -
11 Hb_006275_030 0.1101539602 - - -
12 Hb_000574_020 0.1132040567 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002463_080 0.1209259961 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_003556_020 0.12414955 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
15 Hb_001241_060 0.1465797721 - - -
16 Hb_010222_010 0.1713663681 - - -
17 Hb_000188_090 0.1746155921 - - JHL22C18.10 [Jatropha curcas]
18 Hb_000934_220 0.1802914947 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
19 Hb_000831_040 0.1921102167 - - -
20 Hb_004317_050 0.1964815713 - - -

Gene co-expression network

sample Hb_000195_050 Hb_000195_050 Hb_000563_290 Hb_000563_290 Hb_000195_050--Hb_000563_290 Hb_038675_010 Hb_038675_010 Hb_000195_050--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_000195_050--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_000195_050--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000195_050--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000195_050--Hb_005741_010 Hb_004429_040 Hb_004429_040 Hb_000563_290--Hb_004429_040 Hb_000563_290--Hb_038675_010 Hb_000563_290--Hb_059069_010 Hb_002490_040 Hb_002490_040 Hb_000563_290--Hb_002490_040 Hb_000563_290--Hb_011360_100 Hb_038675_010--Hb_059069_010 Hb_038675_010--Hb_011360_100 Hb_038675_010--Hb_004458_050 Hb_038675_010--Hb_005741_010 Hb_012194_010 Hb_012194_010 Hb_038675_010--Hb_012194_010 Hb_059069_010--Hb_011360_100 Hb_059069_010--Hb_004458_050 Hb_059069_010--Hb_005741_010 Hb_059069_010--Hb_012194_010 Hb_011360_100--Hb_004458_050 Hb_011360_100--Hb_005741_010 Hb_011360_100--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_011360_100--Hb_006275_030 Hb_004458_050--Hb_005741_010 Hb_004458_050--Hb_012194_010 Hb_004458_050--Hb_006275_030 Hb_005741_010--Hb_012194_010 Hb_005741_010--Hb_006275_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.55229 0 0 0 0 9.16606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis