Hb_000196_010

Information

Type -
Description -
Location Contig196: 13926-16707
Sequence    

Annotation

kegg
ID rcu:RCOM_1332490
description Patellin-5, putative
nr
ID XP_002521798.1
description Patellin-5, putative [Ricinus communis]
swissprot
ID Q56Z59
description Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2
trembl
ID B9S729
description Patellin-5, putative OS=Ricinus communis GN=RCOM_1332490 PE=4 SV=1
Gene Ontology
ID GO:0005622
description sec14p-like phosphatidylinositol transfer family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19652: 14066-16668
cDNA
(Sanger)
(ID:Location)		 028_C05.ab1: 14110-14783 , 038_K10.ab1: 14110-14877

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000196_010 0.0 - - Patellin-5, putative [Ricinus communis]
2 Hb_009745_010 0.0698652655 - - cellulose synthase-like protein [Populus tomentosa]
3 Hb_000363_180 0.0739292623 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
4 Hb_002909_100 0.0875529507 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
5 Hb_000950_040 0.0882264457 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_000732_230 0.106304705 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
7 Hb_052117_010 0.1086372868 - - kinase, putative [Ricinus communis]
8 Hb_000012_400 0.1125601035 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
9 Hb_006949_060 0.1136829298 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
10 Hb_000230_470 0.1176443988 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
11 Hb_001898_020 0.1179185461 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
12 Hb_001522_040 0.1192176939 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_001999_320 0.1231793606 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
14 Hb_001009_150 0.1232218186 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
15 Hb_003912_080 0.1255278143 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
16 Hb_002686_210 0.1283284513 - - zinc finger protein, putative [Ricinus communis]
17 Hb_009078_020 0.1313202799 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
18 Hb_010407_030 0.1313607458 - - PREDICTED: casein kinase I-like [Jatropha curcas]
19 Hb_001408_020 0.1314454821 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
20 Hb_000853_330 0.1317906628 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_000196_010 Hb_000196_010 Hb_009745_010 Hb_009745_010 Hb_000196_010--Hb_009745_010 Hb_000363_180 Hb_000363_180 Hb_000196_010--Hb_000363_180 Hb_002909_100 Hb_002909_100 Hb_000196_010--Hb_002909_100 Hb_000950_040 Hb_000950_040 Hb_000196_010--Hb_000950_040 Hb_000732_230 Hb_000732_230 Hb_000196_010--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_000196_010--Hb_052117_010 Hb_009745_010--Hb_000363_180 Hb_009745_010--Hb_002909_100 Hb_001522_040 Hb_001522_040 Hb_009745_010--Hb_001522_040 Hb_009745_010--Hb_052117_010 Hb_001898_020 Hb_001898_020 Hb_009745_010--Hb_001898_020 Hb_000363_180--Hb_000732_230 Hb_000363_180--Hb_000950_040 Hb_001195_420 Hb_001195_420 Hb_000363_180--Hb_001195_420 Hb_001009_150 Hb_001009_150 Hb_000363_180--Hb_001009_150 Hb_000230_470 Hb_000230_470 Hb_002909_100--Hb_000230_470 Hb_003912_080 Hb_003912_080 Hb_002909_100--Hb_003912_080 Hb_005408_100 Hb_005408_100 Hb_002909_100--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_002909_100--Hb_000753_120 Hb_000950_040--Hb_000732_230 Hb_000950_040--Hb_052117_010 Hb_000227_320 Hb_000227_320 Hb_000950_040--Hb_000227_320 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_115513_040 Hb_115513_040 Hb_000950_040--Hb_115513_040 Hb_000732_230--Hb_115513_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_001951_240 Hb_001951_240 Hb_000732_230--Hb_001951_240 Hb_000732_230--Hb_000227_320 Hb_003050_150 Hb_003050_150 Hb_000732_230--Hb_003050_150 Hb_052117_010--Hb_001898_020 Hb_052117_010--Hb_001522_040 Hb_000997_340 Hb_000997_340 Hb_052117_010--Hb_000997_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.91821 34.4005 28.6494 43.8176 6.13644 8.03377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38622 2.02036 1.47772 15.2024 23.345

CAGE analysis