Hb_000196_040

Information

Type -
Description -
Location Contig196: 84480-87521
Sequence    

Annotation

kegg
ID rcu:RCOM_1332620
description Patellin-3, putative
nr
ID XP_002521801.1
description Patellin-3, putative [Ricinus communis]
swissprot
ID Q56ZI2
description Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2
trembl
ID B9S732
description Patellin-3, putative OS=Ricinus communis GN=RCOM_1332620 PE=4 SV=1
Gene Ontology
ID GO:0005622
description patellin-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19653: 84567-87367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000196_040 0.0 - - Patellin-3, putative [Ricinus communis]
2 Hb_042083_070 0.097937416 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
3 Hb_000364_180 0.0980629309 - - PREDICTED: PI-PLC X domain-containing protein At5g67130 [Jatropha curcas]
4 Hb_000413_130 0.1049164374 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
5 Hb_000997_090 0.1067678983 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
6 Hb_001439_180 0.1139338007 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
7 Hb_000367_290 0.1143275378 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
8 Hb_000270_780 0.1149817339 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
9 Hb_015401_020 0.1178166372 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_005314_010 0.1200148847 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_000078_130 0.1221101647 - - -
12 Hb_000490_030 0.1226432389 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
13 Hb_001817_180 0.1229880358 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
14 Hb_029281_010 0.1238174996 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
15 Hb_004221_050 0.1268321271 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
16 Hb_000012_150 0.127184271 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
17 Hb_001431_070 0.1288638416 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
18 Hb_002725_070 0.1295784939 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
19 Hb_005295_040 0.1295829739 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
20 Hb_001357_190 0.130384595 - - ribonuclease III, putative [Ricinus communis]

Gene co-expression network

sample Hb_000196_040 Hb_000196_040 Hb_042083_070 Hb_042083_070 Hb_000196_040--Hb_042083_070 Hb_000364_180 Hb_000364_180 Hb_000196_040--Hb_000364_180 Hb_000413_130 Hb_000413_130 Hb_000196_040--Hb_000413_130 Hb_000997_090 Hb_000997_090 Hb_000196_040--Hb_000997_090 Hb_001439_180 Hb_001439_180 Hb_000196_040--Hb_001439_180 Hb_000367_290 Hb_000367_290 Hb_000196_040--Hb_000367_290 Hb_002725_070 Hb_002725_070 Hb_042083_070--Hb_002725_070 Hb_005295_040 Hb_005295_040 Hb_042083_070--Hb_005295_040 Hb_000462_150 Hb_000462_150 Hb_042083_070--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_042083_070--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_042083_070--Hb_003384_030 Hb_004310_060 Hb_004310_060 Hb_042083_070--Hb_004310_060 Hb_000364_180--Hb_000997_090 Hb_005730_030 Hb_005730_030 Hb_000364_180--Hb_005730_030 Hb_000120_050 Hb_000120_050 Hb_000364_180--Hb_000120_050 Hb_000270_780 Hb_000270_780 Hb_000364_180--Hb_000270_780 Hb_000364_180--Hb_042083_070 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_005314_010 Hb_005314_010 Hb_000413_130--Hb_005314_010 Hb_000413_130--Hb_000367_290 Hb_000413_130--Hb_002725_070 Hb_029281_010 Hb_029281_010 Hb_000413_130--Hb_029281_010 Hb_006091_030 Hb_006091_030 Hb_000413_130--Hb_006091_030 Hb_156850_030 Hb_156850_030 Hb_000997_090--Hb_156850_030 Hb_010080_060 Hb_010080_060 Hb_000997_090--Hb_010080_060 Hb_000032_320 Hb_000032_320 Hb_000997_090--Hb_000032_320 Hb_000077_070 Hb_000077_070 Hb_000997_090--Hb_000077_070 Hb_004055_040 Hb_004055_040 Hb_000997_090--Hb_004055_040 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
131.375 70.2063 7.01874 37.5939 163.926 123.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.3762 29.2482 97.3191 49.6263 3.93822

CAGE analysis