Hb_000196_050

Information

Type -
Description -
Location Contig196: 110198-110728
Sequence    

Annotation

kegg
ID rcu:RCOM_1333080
description hypothetical protein
nr
ID KDP27333.1
description hypothetical protein JCGZ_20265 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19654: 110241-110895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000196_050 0.0 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
2 Hb_003683_040 0.0689709822 - - unnamed protein product [Coffea canephora]
3 Hb_002316_060 0.0846088892 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
4 Hb_000184_050 0.0859401918 - - NOI, putative [Ricinus communis]
5 Hb_009554_010 0.0878384511 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
6 Hb_000815_260 0.0974618097 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
7 Hb_031042_010 0.10091638 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
8 Hb_002701_050 0.1028849067 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
9 Hb_003943_130 0.1061737797 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
10 Hb_015175_030 0.1066207667 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
11 Hb_001638_260 0.1081608181 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
12 Hb_000561_020 0.1081840623 - - hypothetical protein JCGZ_19196 [Jatropha curcas]
13 Hb_000380_190 0.1101243252 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
14 Hb_000500_060 0.1112834377 - - BnaC08g21190D [Brassica napus]
15 Hb_002182_060 0.1128296354 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
16 Hb_004005_010 0.1149346285 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
17 Hb_004007_100 0.11540787 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
18 Hb_001946_210 0.1154149875 - - ribosomal protein l7ae, putative [Ricinus communis]
19 Hb_001269_270 0.1154602418 - - 60S ribosomal protein L27B [Hevea brasiliensis]
20 Hb_000438_220 0.1184108873 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]

Gene co-expression network

sample Hb_000196_050 Hb_000196_050 Hb_003683_040 Hb_003683_040 Hb_000196_050--Hb_003683_040 Hb_002316_060 Hb_002316_060 Hb_000196_050--Hb_002316_060 Hb_000184_050 Hb_000184_050 Hb_000196_050--Hb_000184_050 Hb_009554_010 Hb_009554_010 Hb_000196_050--Hb_009554_010 Hb_000815_260 Hb_000815_260 Hb_000196_050--Hb_000815_260 Hb_031042_010 Hb_031042_010 Hb_000196_050--Hb_031042_010 Hb_003683_040--Hb_000184_050 Hb_154826_010 Hb_154826_010 Hb_003683_040--Hb_154826_010 Hb_003683_040--Hb_000815_260 Hb_003683_040--Hb_009554_010 Hb_130291_010 Hb_130291_010 Hb_003683_040--Hb_130291_010 Hb_000438_220 Hb_000438_220 Hb_002316_060--Hb_000438_220 Hb_003943_130 Hb_003943_130 Hb_002316_060--Hb_003943_130 Hb_001369_640 Hb_001369_640 Hb_002316_060--Hb_001369_640 Hb_001314_100 Hb_001314_100 Hb_002316_060--Hb_001314_100 Hb_001946_210 Hb_001946_210 Hb_002316_060--Hb_001946_210 Hb_000184_050--Hb_130291_010 Hb_000184_050--Hb_000815_260 Hb_008847_020 Hb_008847_020 Hb_000184_050--Hb_008847_020 Hb_010883_150 Hb_010883_150 Hb_000184_050--Hb_010883_150 Hb_001638_260 Hb_001638_260 Hb_009554_010--Hb_001638_260 Hb_009793_010 Hb_009793_010 Hb_009554_010--Hb_009793_010 Hb_003226_210 Hb_003226_210 Hb_009554_010--Hb_003226_210 Hb_002713_070 Hb_002713_070 Hb_009554_010--Hb_002713_070 Hb_006816_530 Hb_006816_530 Hb_009554_010--Hb_006816_530 Hb_000086_550 Hb_000086_550 Hb_009554_010--Hb_000086_550 Hb_000815_260--Hb_130291_010 Hb_004724_160 Hb_004724_160 Hb_000815_260--Hb_004724_160 Hb_002701_050 Hb_002701_050 Hb_000815_260--Hb_002701_050 Hb_000975_110 Hb_000975_110 Hb_000815_260--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000815_260--Hb_001433_050 Hb_004007_100 Hb_004007_100 Hb_031042_010--Hb_004007_100 Hb_000500_060 Hb_000500_060 Hb_031042_010--Hb_000500_060 Hb_007441_270 Hb_007441_270 Hb_031042_010--Hb_007441_270 Hb_031042_010--Hb_002701_050 Hb_000561_020 Hb_000561_020 Hb_031042_010--Hb_000561_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.0737 33.1265 8.74426 33.86 30.6879 67.2848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.862 129.864 42.3205 30.5145 5.25455

CAGE analysis