Hb_000196_080

Information

Type transcription factor
Description TF Family: bHLH
Location Contig196: 130355-135962
Sequence    

Annotation

kegg
ID tcc:TCM_045748
description Basic helix-loop-helix DNA-binding superfamily protein
nr
ID XP_012075467.1
description PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LV17
description Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1
trembl
ID A0A067KJA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10940 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh79-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19663: 131567-131977 , PASA_asmbl_19664: 135500-135879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000196_080 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
2 Hb_000424_210 0.1042417796 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
3 Hb_000125_030 0.1053049401 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
4 Hb_003504_020 0.1100268747 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
5 Hb_000162_140 0.1134794474 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
6 Hb_003581_260 0.1136644263 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
7 Hb_007382_150 0.1181795386 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
8 Hb_029866_020 0.1194470192 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
9 Hb_005000_070 0.1212255445 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
10 Hb_001357_120 0.1223926247 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
11 Hb_000141_020 0.1228708154 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
12 Hb_001575_020 0.1241432148 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002301_230 0.1253139669 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
14 Hb_000099_130 0.1266750378 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
15 Hb_001159_080 0.1266931028 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
16 Hb_000406_120 0.1269515307 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
17 Hb_001616_030 0.127723565 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
18 Hb_000432_050 0.1278173066 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
19 Hb_003185_050 0.1291816128 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
20 Hb_000347_410 0.1294328492 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000196_080 Hb_000196_080 Hb_000424_210 Hb_000424_210 Hb_000196_080--Hb_000424_210 Hb_000125_030 Hb_000125_030 Hb_000196_080--Hb_000125_030 Hb_003504_020 Hb_003504_020 Hb_000196_080--Hb_003504_020 Hb_000162_140 Hb_000162_140 Hb_000196_080--Hb_000162_140 Hb_003581_260 Hb_003581_260 Hb_000196_080--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000196_080--Hb_007382_150 Hb_002659_040 Hb_002659_040 Hb_000424_210--Hb_002659_040 Hb_001519_030 Hb_001519_030 Hb_000424_210--Hb_001519_030 Hb_093458_050 Hb_093458_050 Hb_000424_210--Hb_093458_050 Hb_000424_210--Hb_000162_140 Hb_000099_130 Hb_000099_130 Hb_000424_210--Hb_000099_130 Hb_000406_120 Hb_000406_120 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_000125_030--Hb_003504_020 Hb_000141_020 Hb_000141_020 Hb_000125_030--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_003504_020--Hb_007382_150 Hb_007429_030 Hb_007429_030 Hb_003504_020--Hb_007429_030 Hb_003504_020--Hb_000141_020 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_003504_020--Hb_003579_030 Hb_005839_110 Hb_005839_110 Hb_000162_140--Hb_005839_110 Hb_003147_050 Hb_003147_050 Hb_000162_140--Hb_003147_050 Hb_000162_140--Hb_002659_040 Hb_001616_060 Hb_001616_060 Hb_000162_140--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_000162_140--Hb_003929_120 Hb_002078_460 Hb_002078_460 Hb_000162_140--Hb_002078_460 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_001159_080 Hb_001159_080 Hb_003581_260--Hb_001159_080 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_003581_260--Hb_001135_210 Hb_007382_150--Hb_001616_060 Hb_002097_060 Hb_002097_060 Hb_007382_150--Hb_002097_060 Hb_006573_220 Hb_006573_220 Hb_007382_150--Hb_006573_220 Hb_000069_100 Hb_000069_100 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6522 15.1196 6.69822 7.48397 11.089 11.7941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.2249 50.3308 72.4388 22.3908 12.4092

CAGE analysis